Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08711 ATGGCGAGGGAGAAGATTCAGATAAAGAAGATCGAGAACGCAACGGCGAGGCAAGTGACGTTTTCGAAGAGACGGAGAGGCTTGTTCAAAAAAGCTGAAGAGCTTTCAGTTCTGTGTGATGCTGATGTTGCTCTCATCATTTTTTCTTCTACTGGGAAGCTCTTTGAATATTCCAACTTAAGCACGAGGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAATTTGGCAAAGATGGAAGAGCCGTCGCTCGAGCTGCAGCTAGTTGAAAACAGCAACTGTACGAGATTGAGCAAGGAAATTGCTGACAAGAGTCATCAACTGAGGCAGATGAGGGGAGAGGATCTTCAAGGTATGAATGTTGAACAATTACAACAATTGGAGAGGTCTCTTGAAATTGGCTTGGGTCGTGTAATAGAAAACAAGGGAGAGAAGATTATGATGGAGATTAATGAGCTCCAAAGAAAGGGAAGGCAACTGATGGAAGAGAATGATCGACTTAAGCGACATGTGGCGGGCGTGATAATTAACGGCAAAATTGTTGGAGGAGTTGAATATGAGAATGTGGTTATTGAAGAAGGTGGTCAATCCTCAGAATCTGTCACTAATGTTTACAACTCCACTGGTCCTCCACAAGACTATGAGAGTTCAGACACATCACTCAAATTAGGGCTTCCATATGGCGGATGA 690 0.4319 MAREKIQIKKIENATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSNLSTREILERHHLHSKNLAKMEEPSLELQLVENSNCTRLSKEIADKSHQLRQMRGEDLQGMNVEQLQQLERSLEIGLGRVIENKGEKIMMEINELQRKGRQLMEENDRLKRHVAGVIINGKIVGGVEYENVVIEEGGQSSESVTNVYNSTGPPQDYESSDTSLKLGLPYGG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08711 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa1g08711 229 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g08711 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g08711 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g08711 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa1g08711 229 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g08711 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g08711 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa1g08711 229 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Vifa1g08711 229 MobiDBLite consensus disorder prediction 197 219 - -
Vifa1g08711 229 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vifa1g08711 229 FunFam Transcription factor, MADS-box 13 83 - -
Vifa1g08711 229 Coils Coil 150 170 - -
Vifa1g08711 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Vifa1g08711 229 MobiDBLite consensus disorder prediction 197 229 - -
Vifa1g08711 229 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vifa1g08711 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08711 Vifa-Chr1 1375027624 1375029791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08711 1 229 MADS-box Gene Family AT2G22540 69.167 1.29e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa1g08711 K-box 1.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08711 - - gmx:100789126 362.844