Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08708 ATGGTTGATGTTCTAAGCCCTTTCACAATCCGATCTCCTCCTCCACCATCTCCTCTATCAAACCAAAACAACACCATACCCATGTTATACTATAGTCTAGTAGTGATGGGAGTTGCAGCTATAGTTCTAGCTATATACAACATCATCATCATCAAACGTTGTAATAGAACCCACAATCAACCACAACCCACAAGCGTAAATCTTGGTAATACGAGGTTTGAAAACCAACAAAGAAACTTGCTTTCAAGCTTCAAGTACAGGAAAGAAGTGGTTACAAAAGAAGAAGAAAAGGGTTATGATGAATATGAATGTTCTGTTTGTTTATCGGTTTATGAAGAAGGAGAAGATGTTAGGAAGCTACCAAGGTGTAAACATAGTTTTCATGCTGTTTGTATAGATATGTGGCTATATTCTCATTTTGATTGTCCAATTTGTAGAACACCTGTTGGTTCTTTTTGTGATGGGATGATTGAATCCGGCGGTAGCATCTCTGTTGGATTCGATTAG 507 0.3787 MVDVLSPFTIRSPPPPSPLSNQNNTIPMLYYSLVVMGVAAIVLAIYNIIIIKRCNRTHNQPQPTSVNLGNTRFENQQRNLLSSFKYRKEVVTKEEEKGYDEYECSVCLSVYEEGEDVRKLPRCKHSFHAVCIDMWLYSHFDCPICRTPVGSFCDGMIESGGSISVGFD 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08708 168 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Vifa1g08708 168 FunFam RING-H2 finger protein ATL1 61 151 - -
Vifa1g08708 168 SUPERFAMILY RING/U-box 90 151 - -
Vifa1g08708 168 Pfam Ring finger domain 103 146 IPR001841 -
Vifa1g08708 168 CDD RING-H2_EL5-like 103 146 - -
Vifa1g08708 168 SMART ring_2 104 145 IPR001841 -
Vifa1g08708 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 152 IPR013083 -
Vifa1g08708 168 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 149 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08708 Vifa-Chr1 1374594799 1374595305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08708 32 165 C3H Transcription Factor Family AT5G17600 35.417 1.12e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08708 - - aprc:113852327 226.483