Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08702 ATGTCGGTGAATCTCACGGCGAACGCCATTCCGGCGATAATCAGCGGCGACGTCAACGCGAAACCGCTCGTTCAAGTTCTCGATATTTCATCAGTCGCAAGCAACAAAAACTCTCAGCAGCAGCGGTACCGCGTTCTTCTCTCCGACGCCGTTTCATCTCACCACGCTATGCTCGCTGCTCAACTCAACGACCTAGTCACCACCGGACGTATCAAGAATGGCTCTATCGTCCAGCTTCTCGAGTACATTTGCACTATTTTCCAGAATCGCAGGATTATTATGGTCCTCAACATGGAATCCATAATACCTGATTGTGAGATCATTGGAAGTCCAAAGCCATTTGTGGATTCAGAATTACCAGTTCAGAAAGTATTGCATGATAACACTGTGGGAAGTTCGATCAACAACAACAATAATAACAATTTTAATAATAATAGGAATACTTTGGCTGCTCAAAATACTGGTAGTACTAATGTGCAGAATTTCAGGCCAACAATTCAACCTTCATACAAACCTCCTCCGGTTTACAAAGGCCGTGGTGCTGTTATGAAAAACGAGGCTCCCGCACGTGCAATACCGATAGCTGCTTTAAATCCATATCAAGGTAGGTGGGCCATCAAGGCAAGGGTTACAGCTAAAGGGGATTTGCGCCGATATAACAATGCTCGTGGAGATGGAAAAGTCTTCTCATTTGATCTCCTCGATTCTGATGGTGGTGAAATCCGTGTAACGTGCTTTAATGCTATTGTTGACCGCTTCTATGATACAATTGAAGTTGGAAAAGTTTACTTGATATCCAAAGGTAGCTTGAAACCTGCTCAGAAGAATTTCAACCATTTAAAGAATGAATGGGAAATTATGCTGGATTTAAATTCCACAGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAAACAGCAATTCTCCTTCAGACCTATCAGTGACATTGAGAATGTCGAGAGTAATGCTATCATTGATGTTATTGGGGTCGTGACATCTGTGAATCCTTCAGTTCCCATCTTAAGGAAGAATGGAATGGAAACTCTGAGAAGGATTTTGAATCTGAAGGACAATTCTGGCAGGAGTGTTGAGCTAACACTTTGGGGTGAATTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGTAGATGCTGGTGTTTTCCCCATTTTGGCAGTAAAGGCTGGTAAGGTGAATGAATTCAGTGGAAAGTCTATAGGCTCTATTTCCACTACTCAGCTTTTCATAAATCCAGATTTCCCCGAGGCTCAAAGCTTACGAGCCTGGTTTGATCAAGTTGGAAAAGATTCTGCTTCTCTATCCATTTCTAAGGACATCACTCACGGAGGAACGAAGAACGAGATACGCAAAACTGTGTCTCAAATCAAAGACGAAGGTCTGGGGCGTTCAGACAAACCCGACTGGATAACGATAAGGGCAACCATATCATTCTTGAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATCGGAGATCGACAGTGCAATAAGAAAGTGGCAAGGTCAGGAGACACAAGATGGCAATGCGATAGGTGCAACCAGGAATTCGAGGAATGTGATTATCGATACCTTCTCCAAGCTCAGATTCAAGATCAAACTGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGAGAAGAGATAATGGGGTACCCAGCAAAAGAGCTGTATGCACTGAAGTATGAACAGGAGGATGAAGAAAGGTTTAGCGATATAGTCAAGAGTAGACTCTTCAATCACTTTGTATTTAAGCTGAAAATCAAAGAGGAATTATATGGGGAAGAACAGAAGGTGAAGAGCACGGTAGTTAAGGCAGATAAGGTGAATTATTCTGCAGAGAGTAGGCACATGCTTGATTTGATTTCCAAGTTCTGTAGGAAGCAATTGTAG 1920 0.4297 MSVNLTANAIPAIISGDVNAKPLVQVLDISSVASNKNSQQQRYRVLLSDAVSSHHAMLAAQLNDLVTTGRIKNGSIVQLLEYICTIFQNRRIIMVLNMESIIPDCEIIGSPKPFVDSELPVQKVLHDNTVGSSINNNNNNNFNNNRNTLAAQNTGSTNVQNFRPTIQPSYKPPPVYKGRGAVMKNEAPARAIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAIVDRFYDTIEVGKVYLISKGSLKPAQKNFNHLKNEWEIMLDLNSTVELCPDEDGSIPKQQFSFRPISDIENVESNAIIDVIGVVTSVNPSVPILRKNGMETLRRILNLKDNSGRSVELTLWGEFCNREGQKLQEMVDAGVFPILAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQSLRAWFDQVGKDSASLSISKDITHGGTKNEIRKTVSQIKDEGLGRSDKPDWITIRATISFLKTDTFCYTACPLMIGDRQCNKKVARSGDTRWQCDRCNQEFEECDYRYLLQAQIQDQTGLTWVTAFQEAGEEIMGYPAKELYALKYEQEDEERFSDIVKSRLFNHFVFKLKIKEELYGEEQKVKSTVVKADKVNYSAESRHMLDLISKFCRKQL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08702 639 Gene3D - 3 115 IPR012340 -
Vifa1g08702 639 SUPERFAMILY Nucleic acid-binding proteins 308 435 IPR012340 -
Vifa1g08702 639 Pfam Replication factor-A C terminal domain 476 627 IPR013955 -
Vifa1g08702 639 SUPERFAMILY Nucleic acid-binding proteins 192 303 IPR012340 -
Vifa1g08702 639 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vifa1g08702 639 Gene3D - 443 635 IPR012340 -
Vifa1g08702 639 Pfam OB-fold nucleic acid binding domain 205 285 IPR004365 GO:0003676
Vifa1g08702 639 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vifa1g08702 639 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Vifa1g08702 639 CDD RPA1_DBD_C 460 633 IPR047192 -
Vifa1g08702 639 FunFam Replication protein A subunit 190 299 - -
Vifa1g08702 639 PANTHER REPLICATION FACTOR A 1, RFA1 204 611 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa1g08702 639 FunFam Replication protein A subunit 442 634 - -
Vifa1g08702 639 Gene3D - 303 442 IPR012340 -
Vifa1g08702 639 CDD RPA1_DBD_B 325 432 - -
Vifa1g08702 639 NCBIfam replication factor-a protein 1 (rpa1) 4 633 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa1g08702 639 Gene3D - 190 300 IPR012340 -
Vifa1g08702 639 FunFam Replication protein A subunit 303 441 - -
Vifa1g08702 639 CDD RPA1_DBD_A 197 296 - -
Vifa1g08702 639 FunFam Replication protein A subunit 4 115 - -
Vifa1g08702 639 SUPERFAMILY Nucleic acid-binding proteins 457 634 IPR012340 -
Vifa1g08702 639 Pfam Replication protein A OB domain 314 418 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08702 Vifa-Chr1 1373093101 1373096387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08702 26 633 Core DNA Replication Machinery Family AT2G06510 68.058 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08702 K07466 - gmx:100792409 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08702 1 1373093101 1373096387 Vifa1g08702 1 1373093101 1373096387 ECH