Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08700 ATGGCATTGGATTCAAGTTTCCTTTCAAAAAATGTGTTTTTTAACTTTTATTATATGATTGTATTGTTTAGCCTTGGAATTTTCCTTGTAAGTTCAATCAATGAAGAGGTTTCAATTCTTTTGAAGTTCAAAGCTTCTCTTTTAGACTCAAATGATAATCTTGTTAACTGGAATCCTTCTGATTTAACTCCATGCAATTGGACTGGTGTGTATTGTACTGATTCAATAGTAACTTCTGTTACACTCTACAACCTTAATCTTTCTGGTAGTTTGTCTCCTACAGTCTGTAACCTTCCATGGTTAACCGAGTTGAATGTGTCGAAAAACTTTATCTCGGGTCCAATTCATGAAGCTTTTTTTGTTAACTGTGATAAACTCGAGGTTTTAGACCTTTGTACAAATCGGTTTCATGGCGCATTTTTAACCCTTGTTTGGAAAATGAAAACGCTTAGAAAGCTTTACCTTTGTGAAAACTATATGTATGGCGAAATTCCACAAGATATTGGTGAATTAGCATCACTTGAAGAGTTGGTGATTTATAGCAACAACGTAACAGGAACCATTCCTTCTTCGATAAGTAAGTTGAAGAAGCTTAGAGTTATAAGAGCAGGTTTGAATGGTCTATCAGGAAAATTACCTTCAGAAATCAGTGAATGTGAAAGGTTAGAGACATTAGGGTTAGCACAGAATGAGTTAACAGGTTCTATTCCAAAGGAGCTTCAAAAGCTTCAGAGTCTTACGAATTTGATTCTATGGCAAAACTCTTTTTCTGGTGAGCTTCCTCTTGAGATTGGAAACATTAGTAGCCTTGAATTAATTGCTTTGCATCAAAATTTGTTGATCGGTGGTATACCGAAAGATATTGGAAGGCTATCGCGGTTGAAGAGATTGTACATGTACACAAACCAGTTGAATGGTACAATTTCAGGTCATATTCCAAAGGAGCTTGGAAATTTGAGGCTGCTGAGAAATTTAGATTTGTCCTTGAACAACTTGACAGGTATAATTCCATTGGAGTTTCAAAATCTGAAACTCATGGAAGATTTGCAGCTATTTGATAATCAACTTGAAGGTGTAATTCCACCTCATCTTGGAGCTGTTAAGAATCTTACTATTCTTGATATATCTTCAAATAATCTTGTCGGTATGATCCCGATTCATCTTTGTGAATATCAGCAACTTCAGTTCCTTAGCCTTGGATCAAATAGGCTCTTTGGTAATATTCCTTATAGCTTGAAAATTTGCAAGTCTCTTGTGCAGTTAATGCTAGGGGATAATCTTTTGGCAGGAAGCTTACCTGTTGAATTGTATGAACTTCATAATCTTACCGCGCTCGAGCTTCATCAGAATCGATTCTCCGGACTAATTAGCCCTGGAATTGGTCAGCTTAAGAATTTAGAGAGGCTGCATTTGTCGGATAACAATTTTTCTGGTTATCTACCTTCTGAGATTGGAAATTTGACTCAACTTGTGACATTCAATGTTTCATCGAATCGTTTTGGTGGAAGTATTCCGGACGAGTTAGGAAACTGTGTGAGGTTGCAGAGGCTTGATCTCAGCAGGAACAAGTTTACTGGCACTTTGGGAGACCTTATTCGGCTAACCGATTTGGAGCTCGGAGGCAATCGGTTTACAGGAAGGATCCCTTTTCATTTCGGAAGACTTTCTGCTCTTCAGATAGCACTTAACTTGAGTCACAATAATCTTTCTGATACAATTCCTGATAGCTTAGGGAGCTTACAAATGCTCGAATCGCTTTACTTGAACGACAATCAACTCGTCGGGGAAATTCCTTCATCGATTGGCGACTTGCTTAGTCTTTTAGTATGCAATGTATCTAACAATAAGCTGATAGGAACTGTTCCAGACACAAGTACATTTAGAAAGATGGATTTCACGAATTTCGCCGGGAACAACGGTTTGTGCCGTGTAGGTACTAATCACTGTCATTCATCTATATCTTCATCTCATCGTGAAAAGCAAGCGAAAGACGGTTTGTCGAGGGAAAAGATAGTGAGCATTGTTTCTGGTGTGGTTGGTTTTGTTTCTCTTATTTTCATTGTTTGCATATGTTGGACTATGATGAAACGCCGCCGCAGCGATTCTTTTGTTTCGATTGAAGAACAAACAAAGCCTCATGTTCTAGATGACAGCTATTACTTTCCAAAAGAAGGCTTCACTTACAATGATCTCTTGGAAGCTACTGGAAATTTTGCAGAAGGTGAAGTTATAGGAAGAGGAGCTTGTGGAACTGTCTACAAAGCAGTTATGAATGATGGTGAAGTTATTGCTGTCAAGAAGCTGAATGCACGGGGCGGAGAAGCAGGAAGTGTCGACCGAAGCTTCATTGCGGAGATTTCAACTCTTGGAAAGATTAGGCACAGGAACATTGTGAAGCTGCATGGATTCTGTTTTCATGAGGATTCTAATCTTCTATTGTATGAATACATGGAAAATGGAAGCCTTGGAGAAAAGCTTCATTCGAGTTCAAAAAAATGTTCGTTGGATTGGAATGTTCGATATAAAATTGCGCTAGGAGCAGCGGAAGGTTTATGCTATCTGCATTATGATTGTAAACCTCAAATCATTCATCGCGATATCAAGTCAAACAACATTTTGCTTGATCAGAGTTTTCAGGCTCATGTTGGAGACTTTGGTTTGGCAAAATTGATTGACTTCTCATTCTCCAAATCTATGTCTGCTGTGGCCGGATCATATGGATACATCGCCCCAGAATATGCATACACCATGAAGGTGACTGAAAAATGTGACATATATAGTTTCGGGGTGGTTTTGCTGGAGCTAGTAACCGGGAGGTCACCGGTTCAACCATTGGAACAAGGCGGGGATTTAGTGAATTGGGTGAGAAGATCAATTCAAGCTTCCACACCTACATGTGAATTATTCGACAAGAGATTGAATCTGGAAGAACAAAGAATCGTTGAAGAAATGTCTCTTATTCTCAAAATCGCGCTGTTTTGCACGAGTGCATCTCCACTTAATAGGCCTACAATGAGAGAGGTTATCGCAATGTTGATTGATGCGAGGGAATATGTCAACCAATCACCAACCTCTCCTTCGTCTGAGACTCCACTCGACGAAGAAAAAAGTTCTTCTACCAAAGATGATGGTGTTCAGTTGTGA 3144 0.3899 MALDSSFLSKNVFFNFYYMIVLFSLGIFLVSSINEEVSILLKFKASLLDSNDNLVNWNPSDLTPCNWTGVYCTDSIVTSVTLYNLNLSGSLSPTVCNLPWLTELNVSKNFISGPIHEAFFVNCDKLEVLDLCTNRFHGAFLTLVWKMKTLRKLYLCENYMYGEIPQDIGELASLEELVIYSNNVTGTIPSSISKLKKLRVIRAGLNGLSGKLPSEISECERLETLGLAQNELTGSIPKELQKLQSLTNLILWQNSFSGELPLEIGNISSLELIALHQNLLIGGIPKDIGRLSRLKRLYMYTNQLNGTISGHIPKELGNLRLLRNLDLSLNNLTGIIPLEFQNLKLMEDLQLFDNQLEGVIPPHLGAVKNLTILDISSNNLVGMIPIHLCEYQQLQFLSLGSNRLFGNIPYSLKICKSLVQLMLGDNLLAGSLPVELYELHNLTALELHQNRFSGLISPGIGQLKNLERLHLSDNNFSGYLPSEIGNLTQLVTFNVSSNRFGGSIPDELGNCVRLQRLDLSRNKFTGTLGDLIRLTDLELGGNRFTGRIPFHFGRLSALQIALNLSHNNLSDTIPDSLGSLQMLESLYLNDNQLVGEIPSSIGDLLSLLVCNVSNNKLIGTVPDTSTFRKMDFTNFAGNNGLCRVGTNHCHSSISSSHREKQAKDGLSREKIVSIVSGVVGFVSLIFIVCICWTMMKRRRSDSFVSIEEQTKPHVLDDSYYFPKEGFTYNDLLEATGNFAEGEVIGRGACGTVYKAVMNDGEVIAVKKLNARGGEAGSVDRSFIAEISTLGKIRHRNIVKLHGFCFHEDSNLLLYEYMENGSLGEKLHSSSKKCSLDWNVRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDQSFQAHVGDFGLAKLIDFSFSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVNWVRRSIQASTPTCELFDKRLNLEEQRIVEEMSLILKIALFCTSASPLNRPTMREVIAMLIDAREYVNQSPTSPSSETPLDEEKSSSTKDDGVQL 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08700 1047 Pfam Protein kinase domain 739 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08700 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 862 874 IPR008271 GO:0004672|GO:0006468
Vifa1g08700 1047 SUPERFAMILY L domain-like 34 306 - -
Vifa1g08700 1047 FunFam Nuclear pore complex protein NUP107 33 186 - -
Vifa1g08700 1047 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 817 1029 - -
Vifa1g08700 1047 Pfam Leucine rich repeat 533 593 IPR001611 GO:0005515
Vifa1g08700 1047 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 307 531 - -
Vifa1g08700 1047 FunFam Leucine-rich repeat receptor protein kinase EMS1 532 624 - -
Vifa1g08700 1047 ProSiteProfiles Leucine-rich repeat profile. 321 342 IPR001611 GO:0005515
Vifa1g08700 1047 SUPERFAMILY Protein kinase-like (PK-like) 715 1012 IPR011009 -
Vifa1g08700 1047 Gene3D Ribonuclease Inhibitor 33 309 IPR032675 -
Vifa1g08700 1047 Gene3D Phosphorylase Kinase; domain 1 700 816 - -
Vifa1g08700 1047 SMART LRR_typ_2 487 511 IPR003591 -
Vifa1g08700 1047 SMART LRR_typ_2 367 391 IPR003591 -
Vifa1g08700 1047 SMART LRR_typ_2 580 604 IPR003591 -
Vifa1g08700 1047 SMART LRR_typ_2 319 342 IPR003591 -
Vifa1g08700 1047 SMART LRR_typ_2 463 486 IPR003591 -
Vifa1g08700 1047 SMART LRR_typ_2 171 195 IPR003591 -
Vifa1g08700 1047 Gene3D Ribonuclease Inhibitor 368 657 IPR032675 -
Vifa1g08700 1047 Gene3D Transferase(Phosphotransferase) domain 1 817 1035 - -
Vifa1g08700 1047 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 703 816 - -
Vifa1g08700 1047 SUPERFAMILY L domain-like 308 638 - -
Vifa1g08700 1047 Gene3D Ribonuclease Inhibitor 310 367 IPR032675 -
Vifa1g08700 1047 ProSiteProfiles Protein kinase domain profile. 738 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08700 1047 SMART serkin_6 738 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08700 1047 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 309 1013 - -
Vifa1g08700 1047 FunFam Predicted protein 187 286 - -
Vifa1g08700 1047 MobiDBLite consensus disorder prediction 1020 1047 - -
Vifa1g08700 1047 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08700 Vifa-Chr1 1373068931 1373072559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08700 28 1046 Receptor kinase-like Gene Family AT5G65700 38.389 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g08700 Pkinase 6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08700 - - gmx:100818311 1373.61