Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08698 ATGAACAAGAACAAGTTCCCTTTTACTCCTTCACAATGGCAAGAGCTTGAACATCAAGCCCTTGTTTACAAGTACATGGCTTCTGGTATCTCTATTCCTCCTGATCTTCTTTTCACCATTAGAAAAAGCTTTTTGGACTCTCCTCTCTCTTCAACACTTTTGCCTAACACCCAACAACATCATTTTGGATGGAACTATCTGCAGATGGGTTTGGGAAGAAAGATAGATCCTGAGCCAGGAAGATGTAGAAGAACAGATGGAAAGAAATGGAGATGCTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAGAGACATATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAACTTCTGAAAACAACAACAAATAATGCTTCAACGTTTGCAAACTCATCCATCACCAAAAATACTTCTTCTTTGTCCTTTGATACACAACAACACCAAAACTACCCTCAAAATTCTTGCTATGCTTCCAATTTGCAACATTCCTTTATGTATCCTCAGACATCATCAAGGTCATCAGCATCTTCTGGTATTGGTTTGTCATTTGAAGACAATAATGGTTCCTTGTTTCTTGACAGTAACTCTTGCTCTCAGAATAATGGAGATTACAGGAACAGGTATGTGTATGGACAAAAAGAAGAGGTGGATGAGTATGCATTTTTCAAAGAACCATCTGGTAGCACTACTATGAAAAGCTTCTCTGCTCCATCAATGGAACATGATCCATGGCAACTAACACCACTCACTATGAGTTCATCTTCATCCTCTTCATCTTTGAGACAGAGAAGCTTTTCTTCTATGTCCAATGATTACTCTTGCTTACAACTTCAGAGCTTGAATGAACACTCAAAACAGCAAGAACAAAAAGAGCCTCAGAAAATTGTTCATCGCTTCTTCGATGAATTGCCACACAAAGGGAGAGACCAATGGCTTGATTTGGATGATAACTCATCCACTACTCAACTCTCGATTTCTATTCCTTCATCTGCTCATGATTTTCCAACTTTCACTTCAAGAAATCACCATGATGGTTGA 1047 0.3878 MNKNKFPFTPSQWQELEHQALVYKYMASGISIPPDLLFTIRKSFLDSPLSSTLLPNTQQHHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELLKTTTNNASTFANSSITKNTSSLSFDTQQHQNYPQNSCYASNLQHSFMYPQTSSRSSASSGIGLSFEDNNGSLFLDSNSCSQNNGDYRNRYVYGQKEEVDEYAFFKEPSGSTTMKSFSAPSMEHDPWQLTPLTMSSSSSSSSLRQRSFSSMSNDYSCLQLQSLNEHSKQQEQKEPQKIVHRFFDELPHKGRDQWLDLDDNSSTTQLSISIPSSAHDFPTFTSRNHHDG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08698 348 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Vifa1g08698 348 ProSiteProfiles QLQ domain profile. 7 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa1g08698 348 PANTHER GROWTH-REGULATING FACTOR 5 7 336 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa1g08698 348 Pfam WRC 77 119 IPR014977 -
Vifa1g08698 348 SMART QLQ_2 6 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa1g08698 348 Pfam QLQ 7 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08698 Vifa-Chr1 1372501153 1372502759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08698 7 119 GRF Transcription Factor Family AT3G13960 69.027 3.56e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa1g08698 WRC 7.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08698 - - gmx:100781613 464.536