Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08697 ATGAACAAGAACAAGTTCCCTTTTACTCCTTCACAATGGCAAGAGCTTGAACATCAAGCCCTTGTTTACAAGTACATGGCTTCTGGTATCTCTATTCCTCCTGATCTTCTTTTCACCATTAGAAAAAGCTTTTTGGACTCTCCTCTCTCTTCAACACTTTTGCCTAACACCCAACAACATCATTTTGGATGGAACTATCTGCAGATGGGTTTGGGAAGAAAGATAGATCCTGAGCCAGGAAGATGTAGAAGAACAGATGGAAAGAAATGGAGATGCTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAGAGACATATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAACTTCTGAAAACAACAACAAATAATGCTTCAACGTTTGCAAACTCATCCATCACCAAAAATACTTCTTCTTTGTCCTTTGATACACAACAACACCAAAACTACCCTCAAAATTCTTGCTATGCTTCCAATTTGCAACATTCCTTTATGTATCCTCAGACATCATCAAGGTCATCAGCATCTTCTGGTATTGGTTTGTCATTTGAAGACAATAATGGTTCCTTGTTTCTTGACAGTAACTCTTGCTCTCAGAATAATGGAGATTACAGGTATGTGTATGGACAAAAAGAAGAGGTGGATGAGTATGCATTTTTCAAAGAACCATCTGGTAGCACTACTATGAAAAGCTTCTCTGCTCCATCAATGGAACATGATCCATGGCAACTAACACCACTCACTATGAGTTCATCTTCATCCTCTTCATCTTTGAGACAGAGAAGCTTTTCTTCTATGTCCAATGATTACTCTTGCTTACAACTTCAGAGCTTGAATGAACACTCAAAACAGCAAGAACAAAAAGAGCCTCAGAAAATTGTTCATCGCTTCTTCGATGAATTGCCACACAAAGGGAGAGACCAATGGCTTGATTTGGATGATAACTCATCCACTACTCAACTCTCGATTTCTATTCCTTCATCTGCTCATGATTTTCCAACTTTCACTTCAAGAAATCACCATGATGGTTGA 1041 0.3871 MNKNKFPFTPSQWQELEHQALVYKYMASGISIPPDLLFTIRKSFLDSPLSSTLLPNTQQHHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVELLKTTTNNASTFANSSITKNTSSLSFDTQQHQNYPQNSCYASNLQHSFMYPQTSSRSSASSGIGLSFEDNNGSLFLDSNSCSQNNGDYRYVYGQKEEVDEYAFFKEPSGSTTMKSFSAPSMEHDPWQLTPLTMSSSSSSSSLRQRSFSSMSNDYSCLQLQSLNEHSKQQEQKEPQKIVHRFFDELPHKGRDQWLDLDDNSSTTQLSISIPSSAHDFPTFTSRNHHDG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08697 346 PANTHER GROWTH-REGULATING FACTOR 5 7 334 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa1g08697 346 Pfam QLQ 7 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa1g08697 346 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Vifa1g08697 346 ProSiteProfiles QLQ domain profile. 7 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa1g08697 346 Pfam WRC 77 119 IPR014977 -
Vifa1g08697 346 SMART QLQ_2 6 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08697 Vifa-Chr1 1372501153 1372502759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08697 7 119 GRF Transcription Factor Family AT3G13960 69.027 3.94e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa1g08697 WRC 7.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08697 - - gmx:100781613 457.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08697 1 1372501153 1372502759 Vifa1g08697 1 1372501153 1372502759 ECH
Vifa4g04329 4 1367777347 1367778848 Vifa1g08697 1 1372501153 1372502759 PCT