Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08696 ATGGAAGAACCCACATTTTTGTTCCCCCCACCGCACTCCGACCTCGACGTCAGTTTCACAAGCACCACCACCGACCGCACCTTCACCTCCTCAAGTGCTCGCACCAGCTTAGCCCGCACAAGCAGCCTCGCTCTCAGCTTCAACGACCGTCTCTCAACCACCTCAGCCGCTGCTGGAGACACCATTTCCTCCGCAATCACACGCCGCCCCCACCGTAGCTCTGATCCTAACTGGACCGCAATAAAGGCCGCAACAAATCTCTCCTCCGACGGCCGTCTCCACCTCCATCACTTAAAGCTCCTCCGCCACCTCGGCTCCGGCGACCTCGGCCGTGTTTTCCTCTGCCGTCTCCGTGACTACGATGCTGCAAATTTCGCTCTCAAAGTCGTTGATAAAGATCTTCTTAGTCTCAAGAAATCCACTCACGCGGAAATAGAAGCAGAAATCCTTCACATGCTGGACCATCCTTTTCTCACCACGCTCTACGCACGTATTGATGTTTCTCACTACACCTGCCTCCTAATCGACTACTGCCCCGGCGGAGACCTTCACTCTCTCCTCCGCAAACAACCGGGAAACCGCTTTACACTTTCCGCAGCGCGTTTCTTCGCTTCCGAGATCCTGGTCGCGCTCGAGTATCTCCACGCGCTCGGCGTGGTTTACCGCGACTTAAAACCAGAGAACGTTCTCCTACGTGAAGACGGCCACGTCATGCTTTCTGATTTCGATCTCTGCTTCAAGGCTGACGTGTCACCTACATTTAAATCCTCAACCAATCATAAACCTCATGTGGATCCCACTTACAGTTGTTTCAGTTACAACACATCAAAATCAAGGGAGAGAGTAACAGCTGAGTTCGTAGCAGAACCAACTTCGGCGTTTTCACGCTCGTGCCTTGGAACTCACGAGTATTTAGCGCCGGAGCTTGTTTCTGGTAACGGCCACGGTAACGGCGTGGATTGGTGGGCGTTTGGTGTTTTTATATACGAGCTGTTATACGGGACAACACCATTTAAGGGGTGTAACAAAGAGAGCACGCTGCGCAATATAGCATCTAACACCGATGTTAAGTTCAATGTGGCGGAGAATGAAGAAGTGGGAATGATGGAAGCGAGGGACTTGATAGAGAAGTTGTTAGTGAAGGATCCGAGAAAGAGACTAGGGTGCGCAAGGGGTGCAACGGATATTAAACGGCACCCGTTTTTCGATGGGATTAAGTGGCCTTTGATTAGAATGTATAAGCCACCTGAAGTTAAGGGACTATTGAGGAGGAAAAAATCGGAATCGAGTTTGAGGGATGTGAGTAGTAAAAGGAAGAGAGGGTGGTGGAAGAGACTTGGATGTGTGTTGAGAAATAAAGGAGCTAGACTTGATTTACTTTCCAATTATAGTAATAATAATCGTTATTATTGTTATGTTAATAATAGTAAGGTTAGGTGA 1440 0.4944 MEEPTFLFPPPHSDLDVSFTSTTTDRTFTSSSARTSLARTSSLALSFNDRLSTTSAAAGDTISSAITRRPHRSSDPNWTAIKAATNLSSDGRLHLHHLKLLRHLGSGDLGRVFLCRLRDYDAANFALKVVDKDLLSLKKSTHAEIEAEILHMLDHPFLTTLYARIDVSHYTCLLIDYCPGGDLHSLLRKQPGNRFTLSAARFFASEILVALEYLHALGVVYRDLKPENVLLREDGHVMLSDFDLCFKADVSPTFKSSTNHKPHVDPTYSCFSYNTSKSRERVTAEFVAEPTSAFSRSCLGTHEYLAPELVSGNGHGNGVDWWAFGVFIYELLYGTTPFKGCNKESTLRNIASNTDVKFNVAENEEVGMMEARDLIEKLLVKDPRKRLGCARGATDIKRHPFFDGIKWPLIRMYKPPEVKGLLRRKKSESSLRDVSSKRKRGWWKRLGCVLRNKGARLDLLSNYSNNNRYYCYVNNSKVR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08696 479 PANTHER FLIPPASE KINASE 1-RELATED 35 423 - -
Vifa1g08696 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vifa1g08696 479 FunFam Serine/threonine-protein kinase OXI1 182 250 - -
Vifa1g08696 479 Gene3D Transferase(Phosphotransferase) domain 1 296 417 - -
Vifa1g08696 479 FunFam Serine/threonine-protein kinase OXI1 293 420 - -
Vifa1g08696 479 CDD STKc_phototropin_like 105 418 - -
Vifa1g08696 479 Gene3D Phosphorylase Kinase; domain 1 96 181 - -
Vifa1g08696 479 Gene3D Transferase(Phosphotransferase) domain 1 182 252 - -
Vifa1g08696 479 ProSiteProfiles Protein kinase domain profile. 98 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08696 479 SMART serkin_6 98 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08696 479 Pfam Protein kinase domain 100 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08696 479 SUPERFAMILY Protein kinase-like (PK-like) 75 418 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08696 Vifa-Chr1 1372306592 1372308031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08696 1 476 AGC Kinase Gene Family AT3G14370 63.190 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa1g08696 Pkinase 1.4e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08696 - - lja:Lj0g3v0200189.1 701.434