Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08695 ATGGGTCGTGCTAAAATAACGATGAAGTTCATCCAAAATCAAAAAGCTCGAAAATTAGCTTTCATTCGGAGACAGAATGGATTAATCAAAAAAGTTTGTGAGCTCTCTAGAAAATTTGGAGTTGAAGCTTGTTTAGTTGTGTATGATGGCGATGATGGTAATGCTAGACCGATAACTTGGCCACAAGACACAATAATTGTACACTCAATGATTAAAAAGAAAAATATGGTTGGAGCTGAGATTTCCAAATTGCACAAAAAGATTGTGATGAACAAGTATCCAACATGGAGTCCATGTTTCCATACAATGGAAGGAGAGCAACTTAAAGGCTTCATTGATATTGTAGATGCTAAGATTCAAGCTTGTAATAACAAAATTAGCATGCTAAAAAACATGCAACAAAGTGATAAAACTCAACAAAATGTTGCCTCCACACACTCAAGTCAACTTGATCTCACGCATAGCATTTCTCAAATGCAATATATCTCTAGTGATCCTATAGATAATATGATGGTTGAACCTCATCAAGAACATGCTAATAACCTTGATGAATTTCCGCAGTTAGATTATATGATGCTTAAACCTCAGAACTCGACTTCTGACCTTGCAAGTTTTGAAGAATGGGCTACTCAACTGGATGGTGATGATACTGAGAATTGGAATACTCAACTTGATTTGTCTTCCTGGCAAGATATTTCATTTATATCCTAG 711 0.3558 MGRAKITMKFIQNQKARKLAFIRRQNGLIKKVCELSRKFGVEACLVVYDGDDGNARPITWPQDTIIVHSMIKKKNMVGAEISKLHKKIVMNKYPTWSPCFHTMEGEQLKGFIDIVDAKIQACNNKISMLKNMQQSDKTQQNVASTHSSQLDLTHSISQMQYISSDPIDNMMVEPHQEHANNLDEFPQLDYMMLKPQNSTSDLASFEEWATQLDGDDTENWNTQLDLSSWQDISFIS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08695 236 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vifa1g08695 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g08695 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa1g08695 236 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Vifa1g08695 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa1g08695 236 SUPERFAMILY SRF-like 2 72 IPR036879 GO:0003677|GO:0046983
Vifa1g08695 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08695 Vifa-Chr1 1372095159 1372095935 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08695 1 70 Type I MADS-box Gene Family AT3G05860 38.571 4.13e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa1g08695 SRF-TF 8.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08695 - - psat:127105934 313.153