Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08693 ATGGGTCGTGCTAAAATAACGATGAAGTTCATCCAAAATCAAAAAGCTCGAAAATTAGCTTTCATTCGGAGACAGAATGGATTAATCAAAAAAGTTTGTGAGCTCTCTAGAAAATTTGGAGTTGAAGCTTGTTTAGTTGTGTATGATGGCGATGATGGTAATGCTAGACCGATAACTTGGCCAGAAGACACAATAATTGTACACTCAATGATTAAAAAGTATGAGCAACAAAAGATTGAGACGACTCCAAAGAAGTTTGATGTGAATGACTATTTTGCAAATAGGAAAAATATGGTTGGAGCTGAGATTTCCAAATTGCACAAAAAGATTGTGATGAACAAGTATCCAACATGGAGTCCATGTTTCCATACAATGGAAGGAGAGCAACTTAAAGGCTTCATTGATATCGTAGATGCTAAGATTCAAGCTTGTAATAACAAAATTAGCATGCTAAAAAACATGCAACAAAGTGATAAAACTCAACAAAATGTTGCCTCCACACACTCAAGTCAACTTGATCTCACGCATAGCATTTCTCAAATGCAATATATCTCTTGTGATCCTATAGATAATATGATGGTTGAACCTCATCAAGAACATGCTAATAACCTTGATGAATTTCCGCAGTTAGATTATATGATGCTTAAACCTCAGAACTCGACTTCTGACCTTGCAAGTTTTGAAGAATGGGCTAGTCAACTGGATGGTGATGATACTGAGAATTGGAATACTCAACTTGATTTGTCTTCCTGGCAAGATATTTCATTTATATCCTAG 777 0.3565 MGRAKITMKFIQNQKARKLAFIRRQNGLIKKVCELSRKFGVEACLVVYDGDDGNARPITWPEDTIIVHSMIKKYEQQKIETTPKKFDVNDYFANRKNMVGAEISKLHKKIVMNKYPTWSPCFHTMEGEQLKGFIDIVDAKIQACNNKISMLKNMQQSDKTQQNVASTHSSQLDLTHSISQMQYISCDPIDNMMVEPHQEHANNLDEFPQLDYMMLKPQNSTSDLASFEEWASQLDGDDTENWNTQLDLSSWQDISFIS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08693 258 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Vifa1g08693 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Vifa1g08693 258 PANTHER MADS BOX PROTEIN 3 138 - -
Vifa1g08693 258 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Vifa1g08693 258 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vifa1g08693 258 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Vifa1g08693 258 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa1g08693 258 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08693 Vifa-Chr1 1372050713 1372051489 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08693 1 147 Type I MADS-box Gene Family AT5G55690 28.477 1.53e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa1g08693 SRF-TF 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08693 - - psat:127105934 362.844