Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08690 ATGGAAGATAAAGGATCGAATCACTATGATCATGACCCTCTTCTTCTCACTGACGCTTCTTTTCAACAACAACAACCAGAAGGAACCGTTTCCAATAGGGTTTTACAAACATCATTTAGCTCTCTGAATTCAGCTATGGTGACAGATCCTCAATCCTGTGGATTGTCGCGGGAAAATGAAAGTTCTGTACGGATCAGTGTGCAATTCGATGATCCAATTGTGAAAAGTTTGGTTGACGATGTTTCTGAACGGTCGATATTAGGGTTTTCTACTACTTCACCGGATTTGGTGATCTGTTCTGGCTCACCGGATATTGCTGGAATCAGTTATTGTGACTCTCCTGTGATGTTGAAGAACAAAAATTGCTGCAATTTGGATTTGTCTATGGAGCTTTCTTTTGAGAATGGAATCAATGAGTCTGAAGTTGAAGTTGTTTCTAAAGTTCGTAAGACTCCAACAGTTAAGTTTTCGAATGTGTGTCAAACTTTTGAACCAGAAGAGGAATTACTATCACCTGAAGCCTCCTTTGAGCTTCATCAAACTCCGGTAACTAAAGTCGAGTCACTGCAAGACTACTCTCCAGGAGATAATGAAATGTTGGAAGATGATGGAGTGTCTCAGGAAGCAGAATTGGAGTTCTCACAAGATTTTGATGATATTGGAGTAGAAGAGAAGTTTCTGAAGCTGAAAAGAGATTTTGAGTGTCAGACGAAAGAGCTGGCAGTAACAAAGAGGGAGTTGGGGGAGCTCAAGACGGAGAATCATAAAAAACGTAGTGAATGTCAAGAAGCTTTGAACTCCTTAAAGGAGCTTCAGAACGAGCTAATGCGCAAGTCAATGCACGTGGGATCTTTAGCATTTGCTATTGAGGGGCAAGTGAAAGAGAAAAGTAAGTGGTTTACAACACTGAGAGACATGACGAGGAGATTGAAGATTATGAAAATGGAACACATTAAGCTATTAGAGGAAGCAGAGACATACAAGAAATATGAAGCAGATATAAGCGAATTGGGACTCATTATCAAGTCTAAAATGAATGAACAACTAGAGTTAAATGAAGATCTCAAGTCCAAATATATAGAAGGGACTAAGATTCAAAAAGAGCTTTACAATAAAGTATTAGAGTTGAGAGGAAACATAAGGGTCTTTTGCCGGTGTAGGCCACTCAATGCCGAAGAGATAAAAGGAGGAGCCACAGTGGCCTTAGATTTTGATTCTTCTAAAGATGGCGAGCTTACTGTTATGTCAAATGCATCTTCAAGAAAGACTTTTAAATTTGATGCCGTCTTTGGTCCTCAAGTTGAACAAGCTGATGTCTTTGAGGACACTATACCATTTGCAACCTCAGTTTTAGATGGATACAATGTATGCATTTTTGCATACGGACAGACTGGTACAGGAAAAACCTTCACAATGGAGGGAACAGAAGAGGCTCGTGGAGTTAATTTCAGGACTCTAGAGAAAATGTTTGATATAATCAAGGAAAGACAAACCCTCTATAGTTATGATATCTCCGTAAGTGTCTTGGAAGTGTACAATGAGCAAATAAGAGATTTGCTGGTTTCAGGTAATCATCCAGGAACGTCTGCAAGAAGATTGGAGATAAGGCAAGCTGGTGAAGGAATGCATATTCCAGGTTTGGTTGAGGCACATGTGAACAACATGACTGAAGTGTGGGAAGTCCTACAAACTGGTAGCAATGCAAGGGCTGTAAGCTCAACCAATGCGAACGAGCATAGTAGTCGATCTCACTGCATTCACTGTGTCATGGTTAAGGGGGAAAATTTGGTGAATGGAGAACACACTAGAAGCAAGTTATGGCTTGTGGACCTAGCTGGCAGTGAAAGAGTTGCAAAGACAGAAGTACAAGGGGATAGATTGAAGGAGACACAAAATATTAATAGGTCTCTTTCTGCACTTGGTGATGTCATTTCAGCTCTCGCAACTAAAAGTTCACACATCCCTTTCAGGAACTCCAAGCTTACACACTTGCTGCAAGACTCATTAGGAGGAGATTCAAAGGCACTCATGTTTGTACAAATCAGTCCCAATGAAAATGATTTGAGCGAAACAATTTGCTCTTTGAACTTTGCTAGTAGAGTAAGAGGAATAGAGTTGGGCCCTGCAAAAAAACAGTGGGACACCAGTGAACTTCTGAAACACAAACAGATGGCTGACAAAACTAAACAAGAGCTAAAACTTAAGGATTTTCAAATCAAGAAGATGGAGGATACAATCCATGGATTAGAGTTCAAAATGAAGGAAAGGGATCATAAAAACAAAAGTCTTCAAGACAAGGTGAAAGAACTGGAATCACAGCTTATGATTGAGAGAAAGCTAGCGCGTCAACATGTTGACTCAAAGATAGCTGAGCAGCATCAAATGAATCAAGAGCAAAACAATTCAATTTTGAGGGCAACACCACTCGCGAATCGACCATTAGCAACTCTCAAGAATTGTAACGATCCAACAAGTGGCGGAAATTCAGCTAGACCCTTAATGGAGAACATCATCTCAAAACCTTACAATATACCCTTTTCTACAATAGAAAGCTCCATCAAGTACATTGATCAAAACGAGAAAGAAAACAATCCTGACATGGCCGATAACAAATCGCTACTTCCAAAAAGGACAGCAAGAGCTTCTTTATGCACAATGACACCGCGTGGCGTTCCTTCTGCAACTACTTCAAGGAGGAACTCTCTGATTCCTCTCCCAAGTTTAACACATTTTCAAACACCATTCATTCCAATGTTAACAAACCAAGAAGTCATCGAGGAATCAGAAACAATGCAACCATTACAAGGTCATTGTGAGAGTCCTAAAGAAGTGAAAAGTGGTGTTAAGAAGATCGGTAACATATTAAGAAGAAGCACACATAGAAAAGGTCAGGTGAAGTCTCCACTACAACATATGAGAAAAGTTGGTGGTGTAAATGTAGGCATGGAGAAATTGAGAGTTTCTATTGGAAGTAGAGGGAAATTGGCACAAAGAGGGGTGCAAGCTGGAAATGCTAGAAGAGGTGGAGGTGCTAAAGAACAGAAGAATAGTCATAAGGACAAGGAAAGAGGATGGATATAG 3081 0.4018 MEDKGSNHYDHDPLLLTDASFQQQQPEGTVSNRVLQTSFSSLNSAMVTDPQSCGLSRENESSVRISVQFDDPIVKSLVDDVSERSILGFSTTSPDLVICSGSPDIAGISYCDSPVMLKNKNCCNLDLSMELSFENGINESEVEVVSKVRKTPTVKFSNVCQTFEPEEELLSPEASFELHQTPVTKVESLQDYSPGDNEMLEDDGVSQEAELEFSQDFDDIGVEEKFLKLKRDFECQTKELAVTKRELGELKTENHKKRSECQEALNSLKELQNELMRKSMHVGSLAFAIEGQVKEKSKWFTTLRDMTRRLKIMKMEHIKLLEEAETYKKYEADISELGLIIKSKMNEQLELNEDLKSKYIEGTKIQKELYNKVLELRGNIRVFCRCRPLNAEEIKGGATVALDFDSSKDGELTVMSNASSRKTFKFDAVFGPQVEQADVFEDTIPFATSVLDGYNVCIFAYGQTGTGKTFTMEGTEEARGVNFRTLEKMFDIIKERQTLYSYDISVSVLEVYNEQIRDLLVSGNHPGTSARRLEIRQAGEGMHIPGLVEAHVNNMTEVWEVLQTGSNARAVSSTNANEHSSRSHCIHCVMVKGENLVNGEHTRSKLWLVDLAGSERVAKTEVQGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKALMFVQISPNENDLSETICSLNFASRVRGIELGPAKKQWDTSELLKHKQMADKTKQELKLKDFQIKKMEDTIHGLEFKMKERDHKNKSLQDKVKELESQLMIERKLARQHVDSKIAEQHQMNQEQNNSILRATPLANRPLATLKNCNDPTSGGNSARPLMENIISKPYNIPFSTIESSIKYIDQNEKENNPDMADNKSLLPKRTARASLCTMTPRGVPSATTSRRNSLIPLPSLTHFQTPFIPMLTNQEVIEESETMQPLQGHCESPKEVKSGVKKIGNILRRSTHRKGQVKSPLQHMRKVGGVNVGMEKLRVSIGSRGKLAQRGVQAGNARRGGGAKEQKNSHKDKERGWI 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08690 1026 Pfam Kinesin motor domain 385 704 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08690 1026 MobiDBLite consensus disorder prediction 990 1026 - -
Vifa1g08690 1026 PRINTS Kinesin heavy chain signature 453 474 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08690 1026 PRINTS Kinesin heavy chain signature 574 591 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08690 1026 PRINTS Kinesin heavy chain signature 605 623 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08690 1026 PRINTS Kinesin heavy chain signature 654 675 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08690 1026 MobiDBLite consensus disorder prediction 1011 1026 - -
Vifa1g08690 1026 SMART kinesin_4 377 712 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08690 1026 Coils Coil 254 281 - -
Vifa1g08690 1026 PANTHER KINESIN-LIKE PROTEIN KLP-3 196 857 IPR027640 GO:0003777|GO:0007018
Vifa1g08690 1026 CDD KISc_C_terminal 377 706 - -
Vifa1g08690 1026 Gene3D Kinesin motor domain 374 747 IPR036961 -
Vifa1g08690 1026 ProSiteProfiles Kinesin motor domain profile. 379 704 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g08690 1026 ProSitePatterns Kinesin motor domain signature. 604 615 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa1g08690 1026 FunFam kinesin-like protein KIN-14R 324 706 - -
Vifa1g08690 1026 Coils Coil 753 780 - -
Vifa1g08690 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 741 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08690 Vifa-Chr1 1371393234 1371398111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08690 354 731 Calmodulin-binding Proteins AT5G65930 42.298 1.43e-78 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08690 K10406 - gmx:100817247 1456.81