Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08689 ATGCTTATATTAGTGGGAAACGTGCAAGGGACAATGAGTTCTCTTGCTTCACCAATGAGTTTAGGGAGTTTCATTGGTGGAAGTAGTTCACATTCTGTTGTTAGAAGAGTTTCTCTTTCTAGAGGGAATTGTGTTAGAGGTAAAAAAAGATGGCATTGTGTTTCTTTGTCTGTTTGTAGATATTCAGTTACCACAACTGATTTTGTTGCTGACCAAGGGAAACCGGTTTCCTTTGATTCTTCTAACAATGATGATAGTGATAAAGGTGGTGGAGCTAGTGCTAGTTTTGGACTTAAACCTTCTCCTAAGCCTGTGTTGAAGTCTTCTGATAATGACGCGGTTTTAGGACCGGGTTCGGGTTTAGGGGGTTCATTGAGGAATGGTCAGGGTTCTGATGATGTGGATGAGAGGAATAAGGTGATTGAATCACTTGGAGATGTTTTGGAGAAGGCTGAAAAGCTTGGGAATTCTAAGTTGGATGGTGAAAGAAGTAATGGTTCGGTAAATAAACCACTAGCTAGACCTGAGATAAATGATAAACCTAAGGATGTTAAACCGGTAATTTCGTTACAAAAACATAAGTCTAAGACGTTGAAGAGTATCTGGCGTAAAGGTGATTCGGTTGCGAGTGTGCATAAGGTTGTGAAGGAAGTTCCTAGGCCTAGTGTCAAGAGTAGTGAAGTGGGGGAACCTGTAATAGGGGGAGGGGAGAAGGTAACATCTGAGTCTCGTGATCCTCAGCCTCCTTTAAGGCCTCAACCGACGTTACATTCTAGGCCTTTGATTGCCCCGCCTCCACCGCCGCCCGTTAAAAAAGCTGTTATCTTGAAGGATGATAAAGGGCAAGGCGAAACACCTGTTACGCCTAAAGAAAAAAAGGGGCCTATCTTGATCGATAAGTTTGCTTCAAAGAAACCGGCAGGTGACTCTACGGTGGCTCGAGCAGTTGTAGCGCCTTCGAAACCAGGGAAGGCCCCTCCCCAAGGAGGGTTTAAAGATGATTTCCGGAAGAAAGGGGCTTCGTTTGGGGCAGGACCAAGAAGACGAATGGCAGTGAATAAGGATGGGACTCCTGACAAGGACACTCGTGGTGCTACAAGAAAAGGAAGGAGATGGAATAAAGCGAATCGTAAGGCTTTACGGCTTCAGGCTGCCAGGGATGCTGCTCCGGTTAAAGTTGAAATTCTAGAGGTCAGTGACAATGGGATGCTGGTGGAGGAGTTGGCATACAATTTGGCAATCACTGAAGGTGAAATCCTCGGTTCTCTATACTCCAAGGGGGTTAAACCAGATGGGGTACAAACTCTAGACAAAGATATGGTGAAGATGATATGTAAAGAATATGAAGTAGAAGTTATCGATGCCGATCCTTTCAAAGTTGAAGGATTAGTGAAGAGAAGGGAAATTCTCGAGGAAGATGACCTTGACAAACTCAAAGATAGGCCTCCAGTTATTACTATCATGGGCCATGTTGATCACGGCAAGACAACGCTGTTGGATTATATACGGAAGACCAAGGTAGCGGCTTCTGAAGCTGGTGGGATCACACAGGGAATAGGAGCATATAAAGTGCAAGTACCTTTTGATGGCAAAACGTCGCCTTGTGTTTTTCTCGACACTCCTGGGCACGAGGCATTTGGGGCAATGAGAGCCCGTGGAGCAAGTGTAACAGACATTGCTATTATTGTTGTCGCCGCTGATGACGGTATTCGTCCTCAAACAAAAGAAGCTATAGCTCACGCCAAAGCAGCAGGAGTACCCTTAATCATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGACCGAGTTATGCAAGAGCTTTCTTCAATTGGTTTGATGCCAGAAGACTGGGGTGGCGACATCCCGATGGTTCAGATAAGTGCTCTTCAAGGGGAGAACATAGACGATCTTTTGGAAACAGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCGAAGGGCACAGTCATTGAGGCAGGCTTGGATAAATCAAAAGGACCGTTCGCGACATTTATCGTGCAGAATGGAACACTCAGAAGAAGTGATGTAGTAGTCTGTGGAGGAGCTTTTGGAAAGGTAAGAGCTTTATTCGACGATGGTGGGAAGCGTGTCGATGAAGCTACACCTTCTATACCTATCCAGGTTATCGGATTGAATAATGTTCCAGTTGCTGGTGATGTATTTGAGGTTGTTGAATCCCTTGATATTGCACGTGAAAAGGCAGAGTCTCGTGTTATATCATTGCGAGATGAGCGTATTTCAGCAAAGATGGGAGATGGCAAGGTCACTCTTTCTTCGTTAGCTTCTGCAGTTTCGTCAGGAAAGCTTTCTGGACTAGACTTGCACCAATTGAATGTTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCCGTCAAACAAGCCCTGCAGGTGCTACCGCAAGATAATGTCACGCTGAAGTTTTTGATGGAAACTACCGGTGATGTAAGCACAAGTGATGTTGACCTTGCCGCAGCAAGCAAAGCTATTATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTAAAAAGCTATGCAGATAACAAAGCTGTTGAGATGCGATTATATAAAGTTATTTATGAATTAATTGACGATGTACGAAAAGCAATGGAAGGACTCCTAGATTCCGTTGAGGATCAAGTATCAATTGGCTCAGCAGAATTACGGGCTGTATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTTACAGAAGGAAAGGTTACAAAGGGTTGCGGCATTCGAGTCATTCGAAAGGGAAAAGTAGTTCATGTTGGTATTCTTGATTCTTTGAGACGGGTGAAAGAGATTGTTAAAGAGGTAAATGCCGGTCTCGAGTGCGGGGTTGCGTTAGAAGACTACGATGAGTGGGAAGAGGGTGATATTCTTGAAGCCTTCGACACAATTGAGAAGAGGAGGACCCTTGAAGAAGCCTCAGCATCAATGGCAGCTGCAGTGGAAGGAGTAGGAGCTTAA 3024 0.4451 MLILVGNVQGTMSSLASPMSLGSFIGGSSSHSVVRRVSLSRGNCVRGKKRWHCVSLSVCRYSVTTTDFVADQGKPVSFDSSNNDDSDKGGGASASFGLKPSPKPVLKSSDNDAVLGPGSGLGGSLRNGQGSDDVDERNKVIESLGDVLEKAEKLGNSKLDGERSNGSVNKPLARPEINDKPKDVKPVISLQKHKSKTLKSIWRKGDSVASVHKVVKEVPRPSVKSSEVGEPVIGGGEKVTSESRDPQPPLRPQPTLHSRPLIAPPPPPPVKKAVILKDDKGQGETPVTPKEKKGPILIDKFASKKPAGDSTVARAVVAPSKPGKAPPQGGFKDDFRKKGASFGAGPRRRMAVNKDGTPDKDTRGATRKGRRWNKANRKALRLQAARDAAPVKVEILEVSDNGMLVEELAYNLAITEGEILGSLYSKGVKPDGVQTLDKDMVKMICKEYEVEVIDADPFKVEGLVKRREILEEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKTKVAASEAGGITQGIGAYKVQVPFDGKTSPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTKEAIAHAKAAGVPLIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDIPMVQISALQGENIDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRSDVVVCGGAFGKVRALFDDGGKRVDEATPSIPIQVIGLNNVPVAGDVFEVVESLDIAREKAESRVISLRDERISAKMGDGKVTLSSLASAVSSGKLSGLDLHQLNVILKVDLQGSIEAVKQALQVLPQDNVTLKFLMETTGDVSTSDVDLAAASKAIIFGFNVKAPGSVKSYADNKAVEMRLYKVIYELIDDVRKAMEGLLDSVEDQVSIGSAELRAVFSSGSGRVAGCMVTEGKVTKGCGIRVIRKGKVVHVGILDSLRRVKEIVKEVNAGLECGVALEDYDEWEEGDILEAFDTIEKRRTLEEASASMAAAVEGVGA 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08689 1007 Gene3D Translation factors 894 990 - -
Vifa1g08689 1007 MobiDBLite consensus disorder prediction 319 370 - -
Vifa1g08689 1007 Pfam Elongation factor Tu GTP binding domain 485 645 IPR000795 GO:0003924|GO:0005525
Vifa1g08689 1007 SUPERFAMILY Translation proteins 896 989 IPR009000 -
Vifa1g08689 1007 MobiDBLite consensus disorder prediction 219 273 - -
Vifa1g08689 1007 MobiDBLite consensus disorder prediction 278 297 - -
Vifa1g08689 1007 MobiDBLite consensus disorder prediction 72 136 - -
Vifa1g08689 1007 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 480 653 IPR000795 GO:0003924|GO:0005525
Vifa1g08689 1007 CDD IF2_eIF5B 483 649 - -
Vifa1g08689 1007 SUPERFAMILY Translation proteins 656 740 IPR009000 -
Vifa1g08689 1007 FunFam Translation initiation factor IF-2 788 892 - -
Vifa1g08689 1007 FunFam Translation initiation factor IF-2 893 990 - -
Vifa1g08689 1007 Coils Coil 739 759 - -
Vifa1g08689 1007 Gene3D Translation factors 656 771 - -
Vifa1g08689 1007 NCBIfam small GTP-binding protein domain 482 643 IPR005225 GO:0005525
Vifa1g08689 1007 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 787 899 IPR036925 -
Vifa1g08689 1007 Gene3D - 788 892 IPR036925 -
Vifa1g08689 1007 CDD IF2_mtIF2_II 660 752 IPR044145 -
Vifa1g08689 1007 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 208 996 IPR015760 -
Vifa1g08689 1007 CDD mtIF2_IVc 899 981 - -
Vifa1g08689 1007 MobiDBLite consensus disorder prediction 352 368 - -
Vifa1g08689 1007 MobiDBLite consensus disorder prediction 175 190 - -
Vifa1g08689 1007 FunFam Translation initiation factor IF-2 656 774 - -
Vifa1g08689 1007 MobiDBLite consensus disorder prediction 247 272 - -
Vifa1g08689 1007 NCBIfam translation initiation factor IF-2 401 991 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vifa1g08689 1007 Hamap Translation initiation factor IF-2 [infB]. 7 989 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vifa1g08689 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 656 IPR027417 -
Vifa1g08689 1007 Pfam Translation-initiation factor 2 788 881 IPR023115 -
Vifa1g08689 1007 MobiDBLite consensus disorder prediction 72 89 - -
Vifa1g08689 1007 Gene3D - 477 655 IPR027417 -
Vifa1g08689 1007 FunFam Translation initiation factor IF-2 477 655 - -
Vifa1g08689 1007 ProSitePatterns Initiation factor 2 signature. 942 964 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vifa1g08689 1007 MobiDBLite consensus disorder prediction 155 191 - -
Vifa1g08689 1007 PRINTS GTP-binding elongation factor signature 588 597 IPR000795 GO:0003924|GO:0005525
Vifa1g08689 1007 PRINTS GTP-binding elongation factor signature 484 497 IPR000795 GO:0003924|GO:0005525
Vifa1g08689 1007 PRINTS GTP-binding elongation factor signature 536 546 IPR000795 GO:0003924|GO:0005525
Vifa1g08689 1007 PRINTS GTP-binding elongation factor signature 552 563 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08689 Vifa-Chr1 1371242997 1371247826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08689 481 882 Eukaryotic Initiation Factors Gene Family AT1G21160 28.481 2.02e-27 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08689 K02519 - gmx:100778924 1431