Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g08689 | ATGCTTATATTAGTGGGAAACGTGCAAGGGACAATGAGTTCTCTTGCTTCACCAATGAGTTTAGGGAGTTTCATTGGTGGAAGTAGTTCACATTCTGTTGTTAGAAGAGTTTCTCTTTCTAGAGGGAATTGTGTTAGAGGTAAAAAAAGATGGCATTGTGTTTCTTTGTCTGTTTGTAGATATTCAGTTACCACAACTGATTTTGTTGCTGACCAAGGGAAACCGGTTTCCTTTGATTCTTCTAACAATGATGATAGTGATAAAGGTGGTGGAGCTAGTGCTAGTTTTGGACTTAAACCTTCTCCTAAGCCTGTGTTGAAGTCTTCTGATAATGACGCGGTTTTAGGACCGGGTTCGGGTTTAGGGGGTTCATTGAGGAATGGTCAGGGTTCTGATGATGTGGATGAGAGGAATAAGGTGATTGAATCACTTGGAGATGTTTTGGAGAAGGCTGAAAAGCTTGGGAATTCTAAGTTGGATGGTGAAAGAAGTAATGGTTCGGTAAATAAACCACTAGCTAGACCTGAGATAAATGATAAACCTAAGGATGTTAAACCGGTAATTTCGTTACAAAAACATAAGTCTAAGACGTTGAAGAGTATCTGGCGTAAAGGTGATTCGGTTGCGAGTGTGCATAAGGTTGTGAAGGAAGTTCCTAGGCCTAGTGTCAAGAGTAGTGAAGTGGGGGAACCTGTAATAGGGGGAGGGGAGAAGGTAACATCTGAGTCTCGTGATCCTCAGCCTCCTTTAAGGCCTCAACCGACGTTACATTCTAGGCCTTTGATTGCCCCGCCTCCACCGCCGCCCGTTAAAAAAGCTGTTATCTTGAAGGATGATAAAGGGCAAGGCGAAACACCTGTTACGCCTAAAGAAAAAAAGGGGCCTATCTTGATCGATAAGTTTGCTTCAAAGAAACCGGCAGGTGACTCTACGGTGGCTCGAGCAGTTGTAGCGCCTTCGAAACCAGGGAAGGCCCCTCCCCAAGGAGGGTTTAAAGATGATTTCCGGAAGAAAGGGGCTTCGTTTGGGGCAGGACCAAGAAGACGAATGGCAGTGAATAAGGATGGGACTCCTGACAAGGACACTCGTGGTGCTACAAGAAAAGGAAGGAGATGGAATAAAGCGAATCGTAAGGCTTTACGGCTTCAGGCTGCCAGGGATGCTGCTCCGGTTAAAGTTGAAATTCTAGAGGTCAGTGACAATGGGATGCTGGTGGAGGAGTTGGCATACAATTTGGCAATCACTGAAGGTGAAATCCTCGGTTCTCTATACTCCAAGGGGGTTAAACCAGATGGGGTACAAACTCTAGACAAAGATATGGTGAAGATGATATGTAAAGAATATGAAGTAGAAGTTATCGATGCCGATCCTTTCAAAGTTGAAGGATTAGTGAAGAGAAGGGAAATTCTCGAGGAAGATGACCTTGACAAACTCAAAGATAGGCCTCCAGTTATTACTATCATGGGCCATGTTGATCACGGCAAGACAACGCTGTTGGATTATATACGGAAGACCAAGGTAGCGGCTTCTGAAGCTGGTGGGATCACACAGGGAATAGGAGCATATAAAGTGCAAGTACCTTTTGATGGCAAAACGTCGCCTTGTGTTTTTCTCGACACTCCTGGGCACGAGGCATTTGGGGCAATGAGAGCCCGTGGAGCAAGTGTAACAGACATTGCTATTATTGTTGTCGCCGCTGATGACGGTATTCGTCCTCAAACAAAAGAAGCTATAGCTCACGCCAAAGCAGCAGGAGTACCCTTAATCATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCAGACCGAGTTATGCAAGAGCTTTCTTCAATTGGTTTGATGCCAGAAGACTGGGGTGGCGACATCCCGATGGTTCAGATAAGTGCTCTTCAAGGGGAGAACATAGACGATCTTTTGGAAACAGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCGAAGGGCACAGTCATTGAGGCAGGCTTGGATAAATCAAAAGGACCGTTCGCGACATTTATCGTGCAGAATGGAACACTCAGAAGAAGTGATGTAGTAGTCTGTGGAGGAGCTTTTGGAAAGGTAAGAGCTTTATTCGACGATGGTGGGAAGCGTGTCGATGAAGCTACACCTTCTATACCTATCCAGGTTATCGGATTGAATAATGTTCCAGTTGCTGGTGATGTATTTGAGGTTGTTGAATCCCTTGATATTGCACGTGAAAAGGCAGAGTCTCGTGTTATATCATTGCGAGATGAGCGTATTTCAGCAAAGATGGGAGATGGCAAGGTCACTCTTTCTTCGTTAGCTTCTGCAGTTTCGTCAGGAAAGCTTTCTGGACTAGACTTGCACCAATTGAATGTTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCCGTCAAACAAGCCCTGCAGGTGCTACCGCAAGATAATGTCACGCTGAAGTTTTTGATGGAAACTACCGGTGATGTAAGCACAAGTGATGTTGACCTTGCCGCAGCAAGCAAAGCTATTATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTAAAAAGCTATGCAGATAACAAAGCTGTTGAGATGCGATTATATAAAGTTATTTATGAATTAATTGACGATGTACGAAAAGCAATGGAAGGACTCCTAGATTCCGTTGAGGATCAAGTATCAATTGGCTCAGCAGAATTACGGGCTGTATTCAGCAGTGGTAGTGGTCGTGTTGCTGGATGCATGGTTACAGAAGGAAAGGTTACAAAGGGTTGCGGCATTCGAGTCATTCGAAAGGGAAAAGTAGTTCATGTTGGTATTCTTGATTCTTTGAGACGGGTGAAAGAGATTGTTAAAGAGGTAAATGCCGGTCTCGAGTGCGGGGTTGCGTTAGAAGACTACGATGAGTGGGAAGAGGGTGATATTCTTGAAGCCTTCGACACAATTGAGAAGAGGAGGACCCTTGAAGAAGCCTCAGCATCAATGGCAGCTGCAGTGGAAGGAGTAGGAGCTTAA | 3024 | 0.4451 | MLILVGNVQGTMSSLASPMSLGSFIGGSSSHSVVRRVSLSRGNCVRGKKRWHCVSLSVCRYSVTTTDFVADQGKPVSFDSSNNDDSDKGGGASASFGLKPSPKPVLKSSDNDAVLGPGSGLGGSLRNGQGSDDVDERNKVIESLGDVLEKAEKLGNSKLDGERSNGSVNKPLARPEINDKPKDVKPVISLQKHKSKTLKSIWRKGDSVASVHKVVKEVPRPSVKSSEVGEPVIGGGEKVTSESRDPQPPLRPQPTLHSRPLIAPPPPPPVKKAVILKDDKGQGETPVTPKEKKGPILIDKFASKKPAGDSTVARAVVAPSKPGKAPPQGGFKDDFRKKGASFGAGPRRRMAVNKDGTPDKDTRGATRKGRRWNKANRKALRLQAARDAAPVKVEILEVSDNGMLVEELAYNLAITEGEILGSLYSKGVKPDGVQTLDKDMVKMICKEYEVEVIDADPFKVEGLVKRREILEEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKTKVAASEAGGITQGIGAYKVQVPFDGKTSPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTKEAIAHAKAAGVPLIIAINKIDKDGANPDRVMQELSSIGLMPEDWGGDIPMVQISALQGENIDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLRRSDVVVCGGAFGKVRALFDDGGKRVDEATPSIPIQVIGLNNVPVAGDVFEVVESLDIAREKAESRVISLRDERISAKMGDGKVTLSSLASAVSSGKLSGLDLHQLNVILKVDLQGSIEAVKQALQVLPQDNVTLKFLMETTGDVSTSDVDLAAASKAIIFGFNVKAPGSVKSYADNKAVEMRLYKVIYELIDDVRKAMEGLLDSVEDQVSIGSAELRAVFSSGSGRVAGCMVTEGKVTKGCGIRVIRKGKVVHVGILDSLRRVKEIVKEVNAGLECGVALEDYDEWEEGDILEAFDTIEKRRTLEEASASMAAAVEGVGA | 1007 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g08689 | 1007 | Gene3D | Translation factors | 894 | 990 | - | - | |
Vifa1g08689 | 1007 | MobiDBLite | consensus disorder prediction | 319 | 370 | - | - | |
Vifa1g08689 | 1007 | Pfam | Elongation factor Tu GTP binding domain | 485 | 645 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa1g08689 | 1007 | SUPERFAMILY | Translation proteins | 896 | 989 | IPR009000 | - | |
Vifa1g08689 | 1007 | MobiDBLite | consensus disorder prediction | 219 | 273 | - | - | |
Vifa1g08689 | 1007 | MobiDBLite | consensus disorder prediction | 278 | 297 | - | - | |
Vifa1g08689 | 1007 | MobiDBLite | consensus disorder prediction | 72 | 136 | - | - | |
Vifa1g08689 | 1007 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 480 | 653 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa1g08689 | 1007 | CDD | IF2_eIF5B | 483 | 649 | - | - | |
Vifa1g08689 | 1007 | SUPERFAMILY | Translation proteins | 656 | 740 | IPR009000 | - | |
Vifa1g08689 | 1007 | FunFam | Translation initiation factor IF-2 | 788 | 892 | - | - | |
Vifa1g08689 | 1007 | FunFam | Translation initiation factor IF-2 | 893 | 990 | - | - | |
Vifa1g08689 | 1007 | Coils | Coil | 739 | 759 | - | - | |
Vifa1g08689 | 1007 | Gene3D | Translation factors | 656 | 771 | - | - | |
Vifa1g08689 | 1007 | NCBIfam | small GTP-binding protein domain | 482 | 643 | IPR005225 | GO:0005525 | |
Vifa1g08689 | 1007 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 787 | 899 | IPR036925 | - | |
Vifa1g08689 | 1007 | Gene3D | - | 788 | 892 | IPR036925 | - | |
Vifa1g08689 | 1007 | CDD | IF2_mtIF2_II | 660 | 752 | IPR044145 | - | |
Vifa1g08689 | 1007 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 208 | 996 | IPR015760 | - | |
Vifa1g08689 | 1007 | CDD | mtIF2_IVc | 899 | 981 | - | - | |
Vifa1g08689 | 1007 | MobiDBLite | consensus disorder prediction | 352 | 368 | - | - | |
Vifa1g08689 | 1007 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - | |
Vifa1g08689 | 1007 | FunFam | Translation initiation factor IF-2 | 656 | 774 | - | - | |
Vifa1g08689 | 1007 | MobiDBLite | consensus disorder prediction | 247 | 272 | - | - | |
Vifa1g08689 | 1007 | NCBIfam | translation initiation factor IF-2 | 401 | 991 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Vifa1g08689 | 1007 | Hamap | Translation initiation factor IF-2 [infB]. | 7 | 989 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Vifa1g08689 | 1007 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 472 | 656 | IPR027417 | - | |
Vifa1g08689 | 1007 | Pfam | Translation-initiation factor 2 | 788 | 881 | IPR023115 | - | |
Vifa1g08689 | 1007 | MobiDBLite | consensus disorder prediction | 72 | 89 | - | - | |
Vifa1g08689 | 1007 | Gene3D | - | 477 | 655 | IPR027417 | - | |
Vifa1g08689 | 1007 | FunFam | Translation initiation factor IF-2 | 477 | 655 | - | - | |
Vifa1g08689 | 1007 | ProSitePatterns | Initiation factor 2 signature. | 942 | 964 | IPR000178 | GO:0003743|GO:0003924|GO:0005525|GO:0006413 | |
Vifa1g08689 | 1007 | MobiDBLite | consensus disorder prediction | 155 | 191 | - | - | |
Vifa1g08689 | 1007 | PRINTS | GTP-binding elongation factor signature | 588 | 597 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa1g08689 | 1007 | PRINTS | GTP-binding elongation factor signature | 484 | 497 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa1g08689 | 1007 | PRINTS | GTP-binding elongation factor signature | 536 | 546 | IPR000795 | GO:0003924|GO:0005525 | |
Vifa1g08689 | 1007 | PRINTS | GTP-binding elongation factor signature | 552 | 563 | IPR000795 | GO:0003924|GO:0005525 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g08689 | Vifa-Chr1 | 1371242997 | 1371247826 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g08689 | 481 | 882 | Eukaryotic Initiation Factors Gene Family | AT1G21160 | 28.481 | 2.02e-27 | 118 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g08689 | K02519 | - | gmx:100778924 | 1431 |