Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08679 ATGTCCGACGAAGAGCACCAATTCGACGCCGCCGCCGACGCCGGAGCCTCCAAAACCTATCCTCAACAGGCCGGTACCATTCACAAGAACGGGTACATCGTCATCAAGGCCAGGCCATGCAAGCTTGAAGATGTTGTTCCTTCATCTCACAATTGTGATGTTCCTCATGTGAACCGTACTGACCATCAGCTGATTGATATTTCTGAAGATGGTTTTGTGAGTCTGTTGACTGATAATGGAAGTACTAAGGATGATTTGAAACTTCTCACTGATGATGCACTCCTTACTCAGATTAAAGATGGATTTGCTGAAGGAAAAGATTTTATTGTTTCTGTCATGTCTGCAATGGGAGAAGAGCAGATATGTTCTTTGAAGGACATAAGCAAAGTCTAG 393 0.4427 MSDEEHQFDAAADAGASKTYPQQAGTIHKNGYIVIKARPCKLEDVVPSSHNCDVPHVNRTDHQLIDISEDGFVSLLTDNGSTKDDLKLLTDDALLTQIKDGFAEGKDFIVSVMSAMGEEQICSLKDISKV 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08679 130 SUPERFAMILY Nucleic acid-binding proteins 57 127 IPR012340 -
Vifa1g08679 130 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 41 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vifa1g08679 130 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g08679 130 SMART eIF_5a_2 56 125 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vifa1g08679 130 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 56 125 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Vifa1g08679 130 SUPERFAMILY Translation proteins SH3-like domain 15 64 IPR008991 -
Vifa1g08679 130 Gene3D - 57 129 IPR012340 -
Vifa1g08679 130 CDD S1_eIF5A 57 127 - -
Vifa1g08679 130 Gene3D - 1 45 IPR014722 -
Vifa1g08679 130 PIRSF Transl_init_eIF5A 1 45 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vifa1g08679 130 PIRSF Transl_init_eIF5A 41 129 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Vifa1g08679 130 FunFam Eukaryotic translation initiation factor 5A 57 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08679 Vifa-Chr1 1369442233 1369442711 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08679 1 127 Eukaryotic Initiation Factors Gene Family AT1G13950 67.949 8.59e-69 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08679 K03263 - csav:115698782 215.698