Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08667 ATGACCTGTTTCCCTTTCACATTCAAGAAGACTTCGTCGATTTCGAGACAAAATCTAGACAACGACGAAGATATTTCGGGCATTCATAATGTTAAAATCTATAGTTACAAAGAACTAAGCAAGGCCACAAATGACTTTAGTCAGGCCAATAAAATCGGAGAAGGTGGTTTCGGTTCTGTCTACATGGGACGACTTAAAGGTGGAAAACTTGCTGCTATAAAAGTTCTTTCGGCCGAATCAAAACAAGGGGTGAAGGAATTCTTGACAGAGATTAATGTGATCTCCGATTTCGAGCATGAAAATTTGGTCAAGTTATATGGTTGTTGCGTGGAAAGAAATAGTAGGATATTAGTCTACAATTACCTCGAGAATAATAGTCTTTCGCGAACTCTTCTAGGTGGAAGTCACAATAGTATCTACTTTGATTGGCGAACACGGTGTAGAATATGCGTTGGCGTTGCAAAGGGACTCGCCTTTCTTCACGAAGAAGTCAGGCCTCCAATCATTCATAGGGATATAAAAGCAAGCAATATTCTTCTCGATAAAGATCTTATTCCCAAGATTTCTGATTTCGGTCTTGCAAAGCTTATGCCAGCAAACGCAACTCATGTCAGCACGCGCGTAGCAGGAACATTAGGTTATTTGGCGCCAGAGTATGCAATCGGAGGGAGACTTACACGAAAAGCAGACATTTACAGTTTTGGTGTCCTCCTTGTGGAGATTGTTAGTGGAAGATGTAACACGAATTCACGACTTCCAATAGACGAACAATTCATTTTAGAGAGGACATGGGAACTTTACGAGCGAAAGGAACTAGTTGCGCTGGTAGATACATCTTTAAACGGAGAATTTGACGCCGAGCAGGCGTGTAAATTTCTGAAGATTGGCCTTCTTTGCACTCAAGAATCTCCAAAGAGCCGTCCGTCCATGTCTTCTGTGGTCAAGATGCTTACCGGAGAAATGAAAGTTGATGACAGTACGATGACAAAACCGGCATTAATTTCCGATTTTATGGACCTCAAAGTTAGAAAAAATCAAGTAAGTACTACAATGGATTTGAAGACTACATCTTCATACAATACATCCTCTACCTCAGAGCAACAGGACACTACCATTACATCAGTTGCAACTACACAGTATGATCACAACAGCATGTAA 1158 0.4093 MTCFPFTFKKTSSISRQNLDNDEDISGIHNVKIYSYKELSKATNDFSQANKIGEGGFGSVYMGRLKGGKLAAIKVLSAESKQGVKEFLTEINVISDFEHENLVKLYGCCVERNSRILVYNYLENNSLSRTLLGGSHNSIYFDWRTRCRICVGVAKGLAFLHEEVRPPIIHRDIKASNILLDKDLIPKISDFGLAKLMPANATHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRCNTNSRLPIDEQFILERTWELYERKELVALVDTSLNGEFDAEQACKFLKIGLLCTQESPKSRPSMSSVVKMLTGEMKVDDSTMTKPALISDFMDLKVRKNQVSTTMDLKTTSSYNTSSTSEQQDTTITSVATTQYDHNSM 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08667 385 CDD STKc_IRAK 52 319 - -
Vifa1g08667 385 MobiDBLite consensus disorder prediction 355 385 - -
Vifa1g08667 385 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Vifa1g08667 385 ProSiteProfiles Protein kinase domain profile. 46 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08667 385 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Vifa1g08667 385 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08667 385 SUPERFAMILY Protein kinase-like (PK-like) 23 317 IPR011009 -
Vifa1g08667 385 FunFam cold-responsive protein kinase 1 16 121 - -
Vifa1g08667 385 Pfam Protein tyrosine and serine/threonine kinase 49 317 IPR001245 GO:0004672|GO:0006468
Vifa1g08667 385 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 360 - -
Vifa1g08667 385 FunFam cold-responsive protein kinase 1 122 333 - -
Vifa1g08667 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vifa1g08667 385 Gene3D Transferase(Phosphotransferase) domain 1 122 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08667 Vifa-Chr1 1367897116 1367898827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08667 8 381 Receptor kinase-like Gene Family AT1G53430 46.400 6.62e-108 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g08667 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08667 - - gmx:100782320 596.66