Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08666 ATGACCTGTTTCCCTTTCACATTCAAGAAGACTTCGTCGATTTCGAGACAAAATCTAGACAACGACGAAGTCTTAACAGATATTTCGGGCATTCATAATGTTAAAATCTATAGTTACAAAGAACTAAGCAAGGCCACAAATGACTTTAGTCAGGCCAATAAAATCGGAGAAGGTGGTTTCGGTTCTGTCTACATGGGACGACTTAAAGGTGGAAAACTTGCTGCTATAAAAGTTCTTTCGGCCGAATCAAAACAAGGGGTGAAGGAATTCTTGACAGAGATTAATGTGATCTCCGATTTCGAGCATGAAAATTTGGTCAAGTTATATGGTTGTTGCGTGGAAAGAAATAGTAGGATATTAGTCTACAATTACCTCGAGAATAATAGTCTTTCGCGAACTCTTCTAGGTGGAAGTCACAATAGTATCTACTTTGATTGGCGAACACGGTGTAGAATATGCGTTGGCGTTGCAAAGGGACTCGCCTTTCTTCACGAAGAAGTCAGGCCTCCAATCATTCATAGGGATATAAAAGCAAGCAATATTCTTCTCGATAAAGATCTTATTCCCAAGATTTCTGATTTCGGTCTTGCAAAGCTTATGCCAGCAAACGCAACTCATGTCAGCACGCGCGTAGCAGGAACATTAGGTTATTTGGCGCCAGAGTATGCAATCGGAGGGAGACTTACACGAAAAGCAGACATTTACAGTTTTGGTGTCCTCCTTGTGGAGATTGTTAGTGGAAGATGTAACACGAATTCACGACTTCCAATAGACGAACAATTCATTTTAGAGAGGACATGGGAACTTTACGAGCGAAAGGAACTAGTTGCGCTGGTAGATACATCTTTAAACGGAGAATTTGACGCCGAGCAGGCGTGTAAATTTCTGAAGATTGGCCTTCTTTGCACTCAAGAATCTCCAAAGAGCCGTCCGTCCATGTCTTCTGTGGTCAAGATGCTTACCGGAGAAATGAAAGTTGATGACAGTACGATGACAAAACCGGCATTAATTTCCGATTTTATGGACCTCAAAGTTAGAAAAAATCAAGTAAGTACTACAATGGATTTGAAGACTACATCTTCATACAATACATCCTCTACCTCAGAGCAACAGGACACTACCATTACATCAGTTGCAACTACACAGTATGATCACAACAGCATGTAA 1167 0.4087 MTCFPFTFKKTSSISRQNLDNDEVLTDISGIHNVKIYSYKELSKATNDFSQANKIGEGGFGSVYMGRLKGGKLAAIKVLSAESKQGVKEFLTEINVISDFEHENLVKLYGCCVERNSRILVYNYLENNSLSRTLLGGSHNSIYFDWRTRCRICVGVAKGLAFLHEEVRPPIIHRDIKASNILLDKDLIPKISDFGLAKLMPANATHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLVEIVSGRCNTNSRLPIDEQFILERTWELYERKELVALVDTSLNGEFDAEQACKFLKIGLLCTQESPKSRPSMSSVVKMLTGEMKVDDSTMTKPALISDFMDLKVRKNQVSTTMDLKTTSSYNTSSTSEQQDTTITSVATTQYDHNSM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08666 388 SUPERFAMILY Protein kinase-like (PK-like) 27 320 IPR011009 -
Vifa1g08666 388 CDD STKc_IRAK 55 322 - -
Vifa1g08666 388 Pfam Protein tyrosine and serine/threonine kinase 52 320 IPR001245 GO:0004672|GO:0006468
Vifa1g08666 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vifa1g08666 388 ProSiteProfiles Protein kinase domain profile. 49 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08666 388 Gene3D Phosphorylase Kinase; domain 1 20 124 - -
Vifa1g08666 388 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 33 363 - -
Vifa1g08666 388 Gene3D Transferase(Phosphotransferase) domain 1 125 339 - -
Vifa1g08666 388 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Vifa1g08666 388 FunFam cold-responsive protein kinase 1 16 124 - -
Vifa1g08666 388 FunFam cold-responsive protein kinase 1 125 336 - -
Vifa1g08666 388 MobiDBLite consensus disorder prediction 358 388 - -
Vifa1g08666 388 SMART serkin_6 49 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08666 Vifa-Chr1 1367897116 1367898827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08666 37 384 Receptor kinase-like Gene Family AT1G53430 48.851 6.93e-107 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g08666 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08666 - - gmx:100782320 595.504