Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08656 ATGACAATGAAAACCCTATTGAAATCTATTCTCCCTTCAACTTGTTTCCAAGGAGAGTATCCATCACCAAAGCCAAAGAAAGTTGTATCAACAAAACCAAGAAACTCATCAACTTCACCATCAACTCATAGGATTTCTATAGAAGATTTGAGTTATCAAAACACCACTTTCTCCCAAGAGTTAACTAATTCTCTTTCTCTAGCAGGGTCTAATCTCTATAAGTTTACGGTTCTTGAACTTAAAGCTATAACACAGCACTTTTCTTCCAGTAATTTTCTTGGCGAAGGTGGGTTCGGGCCGGTTCATAAAGGCTTTATCGATGATAGGGTTAGACCGGGTTTGAAAGCTCAACCTGTTGCTGTTAAACTCTTGGACTTGGAAAGCAAGCAAGGTCATAAAGAGTGGTTGACTGAAGTTGTTGTTCTTGGACAATTAAGGCATCCACATCTTTTATTTAGAAGATTTTCAGCATCATTACCATGGTCTACAAGAATGAAGATTGCTGTTGGAGCTGCAAAAGGATTAGCATTTCTTCATGAAGCCGAGCAACCTGTTATTTATAGAGATTTCAAAGCTTCAAACATCTTGCTAGACTCTGATTATAATGCAAAACTCTCTGACTTTGGGTTGGCAAAAGATGGACCTGAAGGAGATGACACCCACGTTTCAACAAGAGTTATGGGCACTCAAGGCTATGCTGCCCCAGAATATGTCATGACAGGTCATTTGACAGCTAAGAGTGATGTGTATAGCTTTGGAGTTGTTTTATTGGAATTGCTAACAGGGAGAAAGTCAGTGGACAAAACCCGTCCTACAAGGGAACAAAACCTAGTTGATTGGGCAAGACCAATGTTAATTGATTCAAGAAAACTTAGCAAAATAATGGATCCAAAACTTGAAGGACAGTACTCTGAAATGGGTACTAAAAAAGCAGCTTCATTGGCTTATCAATGTCTTAGCCATAGGCCGAAGAGCAGGCCTACAATGAGCAATGTGGTTAAGATATTGGAGCCTCTACAAGATTTTGATGATATTCCAATTGGACCCTTTGTTTACACTGTTCCAGTTGAGAATAATGAGGTGGTTAAAGAAAAAGATCAAGCAAAGGAAGATGAATCCACGAAGGAGAGGAAAAGAGAAAACAGTCAATATCATAGGAATGGTCATAGGCATCATCCACTTAAATCTCCTAGGTCGCCAATGCCTCAATCACAATCACGGCCGCAATCACAGCCACGGCCTCGTGTGCGGATTGACAGGCATCAAAATGGTAGAGGAAGTGTGTTGAGTTCTCCATCTCCTTCTCCTTCGTCACATAAAAAAAGCTATGAAACTTAA 1338 0.4006 MTMKTLLKSILPSTCFQGEYPSPKPKKVVSTKPRNSSTSPSTHRISIEDLSYQNTTFSQELTNSLSLAGSNLYKFTVLELKAITQHFSSSNFLGEGGFGPVHKGFIDDRVRPGLKAQPVAVKLLDLESKQGHKEWLTEVVVLGQLRHPHLLFRRFSASLPWSTRMKIAVGAAKGLAFLHEAEQPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAKSDVYSFGVVLLELLTGRKSVDKTRPTREQNLVDWARPMLIDSRKLSKIMDPKLEGQYSEMGTKKAASLAYQCLSHRPKSRPTMSNVVKILEPLQDFDDIPIGPFVYTVPVENNEVVKEKDQAKEDESTKERKRENSQYHRNGHRHHPLKSPRSPMPQSQSRPQSQPRPRVRIDRHQNGRGSVLSSPSPSPSSHKKSYET 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08656 445 MobiDBLite consensus disorder prediction 29 44 - -
Vifa1g08656 445 MobiDBLite consensus disorder prediction 398 412 - -
Vifa1g08656 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Vifa1g08656 445 PANTHER OS01G0588500 PROTEIN-RELATED 44 150 - -
Vifa1g08656 445 MobiDBLite consensus disorder prediction 362 445 - -
Vifa1g08656 445 Pfam Protein tyrosine and serine/threonine kinase 91 151 IPR001245 GO:0004672|GO:0006468
Vifa1g08656 445 SUPERFAMILY Protein kinase-like (PK-like) 74 357 IPR011009 -
Vifa1g08656 445 Pfam Protein kinase domain 164 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08656 445 Gene3D Transferase(Phosphotransferase) domain 1 149 345 - -
Vifa1g08656 445 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Vifa1g08656 445 ProSiteProfiles Protein kinase domain profile. 87 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08656 445 MobiDBLite consensus disorder prediction 362 383 - -
Vifa1g08656 445 MobiDBLite consensus disorder prediction 21 44 - -
Vifa1g08656 445 MobiDBLite consensus disorder prediction 424 445 - -
Vifa1g08656 445 FunFam Probable serine/threonine-protein kinase PBL8 143 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08656 Vifa-Chr1 1367137549 1367139550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08656 70 339 Receptor kinase-like Gene Family AT3G58690 48.355 6.17e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g08656 Pkinase 5.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08656 - - psat:127135798 707.212