Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08650 ATGAGCAACATAAGCATGGTTGAAGCAAAGCTTCCACCAGGGTTCAGATTTCATCCTAGAGATGAAGAACTTGTGTGTGATTACCTGATGAAGAAGCTTACTCATAGTGATTCTCTTCTCATGATTGATGTTGATCTTAACAAGTGTGAACCATGGGATATTCCTGAAGTGGCATGTGTGGGAGGAAAAGAGTGGTATTTTTATACACAAAGAGATCGCAAATATGCAACCGGGCTACGCACAAATCGTGCAACTGCATCGGGCTATTGGAAGGCCACTGGAAAAGACAGATCTATCCTTCGTAAGGGCACTCTTGTTGGCATGAGAAAAACCCTAGTGTTCTATCAAGGAAGGGCACCAAAAGGAAGAAAAACTGAATGGGTTATGCATGAGTTTCGCATTGAAGGTCCTCATGGTCCTCCCAAATTTTCTTCTTCTAAGGAAGATTGGGTATTGTGTAGGGTATTCTACAAAAATAGAGAAGTTGCTACAAAACCAAGCATGGGTAGTTGCTATGATGACACAGGCTCATCATCACTTCCAGCATTAATGGATTCATACATAAGTTTTGATCACCAAGCTCAATTCCACACAGATGAATATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAAAACCAAATCAATCCCTTCTTCAACAACACAACAACAAACATGGAACCAAAAGTAGCCGCAGTGAACAATCACAACAATGCAACAACTACATTTGGAGGAGCACCTTATAGCCTAGATCCTTTGTCATGTGATAGAAAGGTTTTAAAAGCTGTTTTGAGTCAACTCTCCAAAATGGAAAGAGACACTCTTGATAATAGTAATCAAAATCTAAAAGGCTCATCACCAAGCTTGGGTGAAGGAAGTTCTGAGAGTTACTTATCTGAAGTGGCCATGCCCCATATGTGGAACAATTACTAA 933 0.4073 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKLTHSDSLLMIDVDLNKCEPWDIPEVACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRSILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKFSSSKEDWVLCRVFYKNREVATKPSMGSCYDDTGSSSLPALMDSYISFDHQAQFHTDEYEQVPCFSIFSQNQINPFFNNTTTNMEPKVAAVNNHNNATTTFGGAPYSLDPLSCDRKVLKAVLSQLSKMERDTLDNSNQNLKGSSPSLGEGSSESYLSEVAMPHMWNNY 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08650 310 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Vifa1g08650 310 MobiDBLite consensus disorder prediction 271 295 - -
Vifa1g08650 310 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 231 - -
Vifa1g08650 310 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Vifa1g08650 310 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Vifa1g08650 310 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Vifa1g08650 310 FunFam NAC domain-containing protein 100-like 20 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08650 Vifa-Chr1 1365094168 1365098449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08650 2 308 NAC Transcription Factor Family AT1G56010 58.642 1.44e-127 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g08650 NAM 2.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08650 - - gmx:100301890 521.161