LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g08646	ATGGCGTCCGAAAATTCCAAACCAGAAACCGCGCTAGAGAGTTCAAAGGTAGAAACAATAACCAAAGCTGTAGATTCTCTTCTGAAATGGCACAAATCTCGTTTAGAAACCGAAAAACCCAAACTCTTCGAAGAAGAAGACTTCGTCTACCTGGTCTTAACCCTGAAGAAGATTCCCAGCAACGGCCGCGTTAACCCTCACAAGATCCCCATCCCTCACTCCCTCCTCTCGCCGTCATCGGAACAATGTCTCATCATCGACGACCGAGCGAACAAGCCCGGTCGTCTGACTAAAGATGAGGCTAAGAAGAAGATTCAGTCGGAGTCGATTCCTGTTTCGAAGATTCTCAAGCTATCGAAGCTGACTACGGATTATCGCCCGTTCGAGGCGAAGCGGAAGTTGTGTAATTCTTATGATTTGTTTTTTGCTGATAAGAGTGTTGTGCCGTTGTTGCCGAGGTTGCTTGGGAAGCAGTTTTTTAAGAAGAGGAAGGTTCCTGTGCAGGTTGATTTGAAGAAGAGGAACTGGAAGGAGCAGATTGAGAAGGCTTTATCTTCTGCGCTGTTGTTTTTGAGGACTGGGACTTGTAGTGTTTTGAAGGTTGCGAAGATGAGTATGGAGAGGGATGAGATTGTGGAGAATGTGGTTGCGGCTATGGAGGGGGTTGTTGGGGTTTTTCCGAAGAAATGGGGGGTTGTTAGGTCTTTTCATGTTAAGTTATTGGAGTCTGTTGCGTTGCCGGTTTATCAGGCAGTGCCGGATGTTAGGTTGAAGATTGAGGGGGTTAGGGATTTGGAGGCTGCTTTGGAGAAGGATGAGAAGAAGGTTCGTGATGGGAAAGACGGGAAGAAGGGGAAGAAGGGGAGGATTCATGAGATTAAGTATATGGATGATAGAATGAGTGAGGATGGTGATGTTCGTAGTGATCTTGATGTCGCTGTTGATGATATTGATATTGATATTGATGATGATGGTGGTGATAAGGTAGATGATGATCACGAAAACAGTGAAATTGAGAGTGGAGGGATTGGGAGTAAGAAGAGGAAGAAAGGAGTTAAAGGGAAGAAAGAGGCTTTGAGTGAGACGGGAGGTGTGAAATCGTTGAAGGCTTCTGCTAAGAGGAAGAAGAAAGATGTGTTGGAGACTGTGAATGCTGCAGAAGAAAGTTCCATCAAGAAGGGCAGTGAAAAGAGAAAGAAATTGTCTGCGAAAGATGAGGGTTCGGACAAGAAGAAGAAAAGAGGGTCGGTTGAGAAAGCGGCTACTGAAGATTTGGTCAAGAAGAGTGAGGATAAGGTATCGACAGAGGATGTGGGTTCAAACAAGAAGAAGAAAAAGGGGTCAGCTGTATTGACCGAGGATGTGGGTTCGGACAAGAAGAAGAAAAAGGGGTCGGCTGTGAAAGCTGCTACTGAAGATTTGATCAAGAAGAGTGAGGATAAAGTATTGACGGAGGATGCGGCTTTGGACAAGAAGATGAAAAAGGGGTCGGCTGTGAAAGCTGCTACTGGAGATTTGATCAAGAAGAGTGAGGATAAAGTATCGACCGGGGATGCGGGTTTGGCCAAGAAGAAAAGAGGGTCGGCTATGAAAGCTGCCACCGAAGAGTTGATCAAGAAGAGCAAGGATAAATTATTCACTGATGATGCTGGTTCGGCCAAGAAAAAGAGAGCTGATGTGAAGGTAAAAGATAGGAAAAGTAAGAAAGCTGTTTGA	1716	0.4534	MASENSKPETALESSKVETITKAVDSLLKWHKSRLETEKPKLFEEEDFVYLVLTLKKIPSNGRVNPHKIPIPHSLLSPSSEQCLIIDDRANKPGRLTKDEAKKKIQSESIPVSKILKLSKLTTDYRPFEAKRKLCNSYDLFFADKSVVPLLPRLLGKQFFKKRKVPVQVDLKKRNWKEQIEKALSSALLFLRTGTCSVLKVAKMSMERDEIVENVVAAMEGVVGVFPKKWGVVRSFHVKLLESVALPVYQAVPDVRLKIEGVRDLEAALEKDEKKVRDGKDGKKGKKGRIHEIKYMDDRMSEDGDVRSDLDVAVDDIDIDIDDDGGDKVDDDHENSEIESGGIGSKKRKKGVKGKKEALSETGGVKSLKASAKRKKKDVLETVNAAEESSIKKGSEKRKKLSAKDEGSDKKKKRGSVEKAATEDLVKKSEDKVSTEDVGSNKKKKKGSAVLTEDVGSDKKKKKGSAVKAATEDLIKKSEDKVLTEDAALDKKMKKGSAVKAATGDLIKKSEDKVSTGDAGLAKKKRGSAMKAATEELIKKSKDKLFTDDAGSAKKKRADVKVKDRKSKKAV	571

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g08646	571	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	22	240	-	-
	Vifa1g08646	571	SUPERFAMILY	Ribosomal protein L1	19	249	IPR023674	-
	Vifa1g08646	571	Coils	Coil	369	389	-	-
	Vifa1g08646	571	MobiDBLite	consensus disorder prediction	331	346	-	-
	Vifa1g08646	571	MobiDBLite	consensus disorder prediction	390	471	-	-
	Vifa1g08646	571	Gene3D	-	94	186	IPR016095	-
	Vifa1g08646	571	MobiDBLite	consensus disorder prediction	512	533	-	-
	Vifa1g08646	571	FunFam	Ribosomal protein L1p/L10e family	94	185	-	-
	Vifa1g08646	571	MobiDBLite	consensus disorder prediction	318	471	-	-
	Vifa1g08646	571	CDD	Ribosomal_L1	20	248	IPR028364	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g08646	137	239	Cytoplasmic Ribosomal Protein Gene Family	AT2G27530	28.155	3.88e-07	49.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g08646	K14775		-	gmx:100782862	406.371

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