Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08646 ATGGCGTCCGAAAATTCCAAACCAGAAACCGCGCTAGAGAGTTCAAAGGTAGAAACAATAACCAAAGCTGTAGATTCTCTTCTGAAATGGCACAAATCTCGTTTAGAAACCGAAAAACCCAAACTCTTCGAAGAAGAAGACTTCGTCTACCTGGTCTTAACCCTGAAGAAGATTCCCAGCAACGGCCGCGTTAACCCTCACAAGATCCCCATCCCTCACTCCCTCCTCTCGCCGTCATCGGAACAATGTCTCATCATCGACGACCGAGCGAACAAGCCCGGTCGTCTGACTAAAGATGAGGCTAAGAAGAAGATTCAGTCGGAGTCGATTCCTGTTTCGAAGATTCTCAAGCTATCGAAGCTGACTACGGATTATCGCCCGTTCGAGGCGAAGCGGAAGTTGTGTAATTCTTATGATTTGTTTTTTGCTGATAAGAGTGTTGTGCCGTTGTTGCCGAGGTTGCTTGGGAAGCAGTTTTTTAAGAAGAGGAAGGTTCCTGTGCAGGTTGATTTGAAGAAGAGGAACTGGAAGGAGCAGATTGAGAAGGCTTTATCTTCTGCGCTGTTGTTTTTGAGGACTGGGACTTGTAGTGTTTTGAAGGTTGCGAAGATGAGTATGGAGAGGGATGAGATTGTGGAGAATGTGGTTGCGGCTATGGAGGGGGTTGTTGGGGTTTTTCCGAAGAAATGGGGGGTTGTTAGGTCTTTTCATGTTAAGTTATTGGAGTCTGTTGCGTTGCCGGTTTATCAGGCAGTGCCGGATGTTAGGTTGAAGATTGAGGGGGTTAGGGATTTGGAGGCTGCTTTGGAGAAGGATGAGAAGAAGGTTCGTGATGGGAAAGACGGGAAGAAGGGGAAGAAGGGGAGGATTCATGAGATTAAGTATATGGATGATAGAATGAGTGAGGATGGTGATGTTCGTAGTGATCTTGATGTCGCTGTTGATGATATTGATATTGATATTGATGATGATGGTGGTGATAAGGTAGATGATGATCACGAAAACAGTGAAATTGAGAGTGGAGGGATTGGGAGTAAGAAGAGGAAGAAAGGAGTTAAAGGGAAGAAAGAGGCTTTGAGTGAGACGGGAGGTGTGAAATCGTTGAAGGCTTCTGCTAAGAGGAAGAAGAAAGATGTGTTGGAGACTGTGAATGCTGCAGAAGAAAGTTCCATCAAGAAGGGCAGTGAAAAGAGAAAGAAATTGTCTGCGAAAGATGAGGGTTCGGACAAGAAGAAGAAAAGAGGGTCGGTTGAGAAAGCGGCTACTGAAGATTTGGTCAAGAAGAGTGAGGATAAGGTATCGACAGAGGATGTGGGTTCAAACAAGAAGAAGAAAAAGGGGTCAGCTGTATTGACCGAGGATGTGGGTTCGGACAAGAAGAAGAAAAAGGGGTCGGCTGTGAAAGCTGCTACTGAAGATTTGATCAAGAAGAGTGAGGATAAAGTATTGACGGAGGATGCGGCTTTGGACAAGAAGATGAAAAAGGGGTCGGCTGTGAAAGCTGCTACTGGAGATTTGATCAAGAAGAGTGAGGATAAAGTATCGACCGGGGATGCGGGTTTGGCCAAGAAGAAAAGAGGGTCGGCTATGAAAGCTGCCACCGAAGAGTTGATCAAGAAGAGCAAGGATAAATTATTCACTGATGATGCTGGTTCGGCCAAGAAAAAGAGAGCTGATGTGAAGGTAAAAGATAGGAAAAGTAAGAAAGCTGTTTGA 1716 0.4534 MASENSKPETALESSKVETITKAVDSLLKWHKSRLETEKPKLFEEEDFVYLVLTLKKIPSNGRVNPHKIPIPHSLLSPSSEQCLIIDDRANKPGRLTKDEAKKKIQSESIPVSKILKLSKLTTDYRPFEAKRKLCNSYDLFFADKSVVPLLPRLLGKQFFKKRKVPVQVDLKKRNWKEQIEKALSSALLFLRTGTCSVLKVAKMSMERDEIVENVVAAMEGVVGVFPKKWGVVRSFHVKLLESVALPVYQAVPDVRLKIEGVRDLEAALEKDEKKVRDGKDGKKGKKGRIHEIKYMDDRMSEDGDVRSDLDVAVDDIDIDIDDDGGDKVDDDHENSEIESGGIGSKKRKKGVKGKKEALSETGGVKSLKASAKRKKKDVLETVNAAEESSIKKGSEKRKKLSAKDEGSDKKKKRGSVEKAATEDLVKKSEDKVSTEDVGSNKKKKKGSAVLTEDVGSDKKKKKGSAVKAATEDLIKKSEDKVLTEDAALDKKMKKGSAVKAATGDLIKKSEDKVSTGDAGLAKKKRGSAMKAATEELIKKSKDKLFTDDAGSAKKKRADVKVKDRKSKKAV 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08646 571 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 22 240 - -
Vifa1g08646 571 SUPERFAMILY Ribosomal protein L1 19 249 IPR023674 -
Vifa1g08646 571 Coils Coil 369 389 - -
Vifa1g08646 571 MobiDBLite consensus disorder prediction 331 346 - -
Vifa1g08646 571 MobiDBLite consensus disorder prediction 390 471 - -
Vifa1g08646 571 Gene3D - 94 186 IPR016095 -
Vifa1g08646 571 MobiDBLite consensus disorder prediction 512 533 - -
Vifa1g08646 571 FunFam Ribosomal protein L1p/L10e family 94 185 - -
Vifa1g08646 571 MobiDBLite consensus disorder prediction 318 471 - -
Vifa1g08646 571 CDD Ribosomal_L1 20 248 IPR028364 -
Vifa1g08646 571 Pfam Ribosomal protein L1p/L10e family 38 244 IPR028364 -
Vifa1g08646 571 MobiDBLite consensus disorder prediction 548 571 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08646 137 239 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 28.155 3.88e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08646 K14775 - gmx:100782862 406.371