Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08643 ATGATACCCATTTCAATTAAGGTATCTCTGGATTTCATGAAGAGCTTGTATGCAAAGTTTATTGACTGGGACCATATAATGATTGACCTAGAGACTAGTATTCCATCTCATGCAACAAATACAGCGATAAGCGAGGACCTTGGACAAATAGAGTACATTTTGACAGACAAAACAGGCACCTTGACTGAAAATAAGATGATATTCAGAAGATGTTGTATTAATGGAATTTTCTATGGAAATGAGAGTGGAGATGCATTGAAAGATGTAAAGCTCCTTAATGCTGTTTCCAGTGGTTCTCCTGATGCTGCACAGTCTCAGGATGAAGATGCTCTTGATCAAGCTGCTGCTCAGCCGCATATGATTTTCGTCAATAAAAGTGGAAACATTTTTGAAGCCAAGTTCAACACTACTATACTTCAGTATGAAGTCCTGGAGATCTTAGAGTTCACTTCTGATAGGAAAAGAATGTCAGTAGTGTTGAAAGATTGCCAAGATGGAAAGATCCTTCTCCTGTCAAAGGGAGCAGATGAGGCTATTCTTCCATATGCTCGTGCTGGGCAGCAAACTCGTCACTTCATTAAAGCTGTGGAACAATATGCTCACTTGGGATTACGTACACTATGTTTGGTTTGGCGCGAGTTAAAGAAAGATGAATATCAAGATTGGTCTTCGATGTTTAAAGAAGCTAGTAGCACTTTGGTTGATAGGGAGTGGAGAGTAGCTGAGGTCTGCCAAAGAATAGAACATGACTTGGAAATCCTTGGTGTTACGGCGATAGAAGATCGCTTACAGGATGAAGTTCCTGAAACAATAGAAACACTAAGGAAAGCTGGAATAAATTTTTGGATGCTAACAAGAGACAAACAAAATACTGCAATAACAAAACCCCAATACCGATTCTCGATCTCCTCACTCTACTTAGGACTTGGAAGAAACAGCCGCAACAAACCCGACGACTCACTCCGCGAACCACCGAACAAAGCGCAAAAACGCGTGCATGCTATTAACAGAGAGCTTCCACCGCCAAATGAGCAATTCATTTTAGATTTTGAGCAACTTCAGAGCCAGTTTCCGGACCATGAGCAATTACGTTTCGTGGTTGAAGCTGTTCTTATACCATTGGTTGCACAGTGTAGTGTTTCTTCGGCAGAATTACCGGTTGATCAAATCAGTCAAGCAGTGTCAACAATTACCTCTTCTAGCTTATCACAGTCAGGAATGTTGCCTCCTCTAAATACAATTACTAATTCTTCTAATTTTCAGTCTTCAAATCCTGCATCTCCATTGAATTCTATCCATACTATTGGCTCCCCTGCATAG 1320 0.4068 MIPISIKVSLDFMKSLYAKFIDWDHIMIDLETSIPSHATNTAISEDLGQIEYILTDKTGTLTENKMIFRRCCINGIFYGNESGDALKDVKLLNAVSSGSPDAAQSQDEDALDQAAAQPHMIFVNKSGNIFEAKFNTTILQYEVLEILEFTSDRKRMSVVLKDCQDGKILLLSKGADEAILPYARAGQQTRHFIKAVEQYAHLGLRTLCLVWRELKKDEYQDWSSMFKEASSTLVDREWRVAEVCQRIEHDLEILGVTAIEDRLQDEVPETIETLRKAGINFWMLTRDKQNTAITKPQYRFSISSLYLGLGRNSRNKPDDSLREPPNKAQKRVHAINRELPPPNEQFILDFEQLQSQFPDHEQLRFVVEAVLIPLVAQCSVSSAELPVDQISQAVSTITSSSLSQSGMLPPLNTITNSSNFQSSNPASPLNSIHTIGSPA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08643 439 MobiDBLite consensus disorder prediction 413 439 - -
Vifa1g08643 439 MobiDBLite consensus disorder prediction 311 330 - -
Vifa1g08643 439 MobiDBLite consensus disorder prediction 315 330 - -
Vifa1g08643 439 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 60 267 IPR023299 GO:0000166
Vifa1g08643 439 FunFam Phospholipid-transporting ATPase 101 241 - -
Vifa1g08643 439 Gene3D - 53 257 IPR023299 GO:0000166
Vifa1g08643 439 Gene3D - 258 296 IPR023214 -
Vifa1g08643 439 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 103 294 - -
Vifa1g08643 439 ProSitePatterns E1-E2 ATPases phosphorylation site. 56 62 IPR018303 -
Vifa1g08643 439 Pfam Cation transport ATPase (P-type) 108 181 - -
Vifa1g08643 439 SUPERFAMILY HAD-like 49 293 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08643 Vifa-Chr1 1363609423 1363611018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08643 1 293 Primary Pumps ATPases AT5G44240 71.787 4.44e-156 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08643 K01530 - gmx:100786505 495.738