Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08639 ATGGCATCTGATTCCAACGCCACCAACACGCTCCTAGCCATTTGCTACAACCGCGGTTCTCTTCAGCTTCTCGATCAGAGGAAGCTACCTTTAGAAAGCGTTTACTTGGAAATTCGGGATTCAAATGATGGCTGGAATGCTATACGAGATATGGTGGTCCGAGGAGCACCTGCTATTGCGATTGCAGCAGCACTCTCTCTGGCTGTGGAGGTATCCAATTTAGATGATTTCAATGGAACTACTGATGACGCTGTATACTTCCTGCAGAAGAAGTTGGACTATCTTGTCTCAAGTCGGCCCACTGCAGTGAACTTGTCAGATGCTGCGACAAAGCTCAAAGAAATCATATTGAAATCTGCTGCTACAACTTCAGAGGCTAGGGGTGTTTTTCAGGCTTATGTAGAAGCTTCCGAAATAATGCTTGAAGACGATGTCGCATCGAACAAAGCAATTGGGACTTATGGAGCTAAGTTTATTAAAAACCATACAGGGAAACAAAAGCTTTCTGTTTTGACCCATTGCAACACTGGAAGTTTAGCCACAGCTGGATATGGTACTGCTCTTGGTGTAATCCGTGCACTTAACAGTGGAGGAATTTTAGAAAGGGCTTATTGTACGGAAACACGCCCATTCAATCAAGGATCCAGACTTACTGCCTATGAGTTGGTACATGAAAAAATACCAGCAACTCTCATAGCAGATTCGGCCGCAGCTGCACTAATGCAAGCAGGACGTGTGGATGCTGTTGTTGTTGGCGCAGATCGTGTTGCATCGAATGGTGACACAGCCAACAAAATCGGAACCTATAGTGTTGCCTTATGTGCCAAGTTTCATAATGTACCTTTTTATGTTGCTGCACCCTTGACTTCCATTGATCTATCACTTTCTTCTGGGCAACAAATTGTTATTGAGGAGAGATCTCCGAAGGAGTTGTTGAACTCACGCGGTGGACTTGGAGAGCAAGTTGCCGCCTCAGGAATATCTGTGTGGAATCCGGCATTTGATGTTACACCAGCTAATCTAATTTCTGGGATCATCACTGAGAAGGGTGTCATTACAAAAACTACTGCTGGTGATGCTTTTGACATAAAAGCTTTCGTACAGAAAACAGCTTAA 1116 0.4435 MASDSNATNTLLAICYNRGSLQLLDQRKLPLESVYLEIRDSNDGWNAIRDMVVRGAPAIAIAAALSLAVEVSNLDDFNGTTDDAVYFLQKKLDYLVSSRPTAVNLSDAATKLKEIILKSAATTSEARGVFQAYVEASEIMLEDDVASNKAIGTYGAKFIKNHTGKQKLSVLTHCNTGSLATAGYGTALGVIRALNSGGILERAYCTETRPFNQGSRLTAYELVHEKIPATLIADSAAAALMQAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQQIVIEERSPKELLNSRGGLGEQVAASGISVWNPAFDVTPANLISGIITEKGVITKTTAGDAFDIKAFVQKTA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08639 371 Pfam Initiation factor 2 subunit family 53 353 IPR000649 GO:0044237
Vifa1g08639 371 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 13 354 IPR005251 -
Vifa1g08639 371 SUPERFAMILY NagB/RpiA/CoA transferase-like 9 355 IPR037171 -
Vifa1g08639 371 Gene3D - 201 365 IPR042529 -
Vifa1g08639 371 FunFam Methylthioribose-1-phosphate isomerase 166 364 - -
Vifa1g08639 371 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 11 363 IPR005251 -
Vifa1g08639 371 Gene3D - 9 200 IPR027363 -
Vifa1g08639 371 FunFam Methylthioribose-1-phosphate isomerase 9 200 - -
Vifa1g08639 371 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 7 369 - -
Vifa1g08639 371 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 39 354 IPR011559 GO:0044249
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08639 50 369 Eukaryotic Initiation Factors Gene Family AT2G05830 76.324 6.23e-170 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08639 K08963 - gmx:100799311 574.704