Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08631 ATGGCCGCTGCTGCCAACCACCACCTCCTCCTCCTCTTCTCTCTCTCCTTACTTTCTCTATCCACCGCACCACCACCACCCTCAGAAACTCAATCCCTCCTCAAACTAAAACTATCTCTCAATAACTCCGACAAAAACTTAGCCTCATGGATCCCAAACGTCTCTCCATGTTCCGGCACATGGATTGGCGTCATCTGCTTCAACAATGTGATCACCGGCCTCCATCTCTCTGACCTCGGCCTCTCTGGGACAATAGACGTCGACGCTATCTCCGAGATTCGCGGCCTAAGAACACTCAGCTTCGTCAACAACTCTTTCTCAGGTCCAATCCCGCAGTTCCACAAACTCGGCACCGTCAAGTCTCTTCTCCTCACGCAAAACAATTTCTCCGGGCCTATTCCACCGGACTTTTTCTCTCATTTATCATCCTTGAAGAAAATATGGTTCTCCAATAACAAATTCTCCGGCGACATTCCGGTTTCTTTAACCGAACTCGACCTTCTCAAAGAGCTTCACCTCGAAGGAAACCAGTTCTCCGGTCAGTTACCGAACCTCAGACAAGATATCAAATCATTCGACGTTTCGAATAACAAGTTAGAAGGTCCTATTCCAGAAGGCCTGTCCAAATTCAGTGCAGCTTCGTTTTCTGGAAACGGTGGTCTGTGTGGAAAACCGTTGGAAAAACAATGTGTCGCTTCATCTTCCTCCGAGTATTCTCTACCAGATAACGTAACAGAAAATGATTCTGGATCTGATTTGCCGTTGAAACTGATAATGATTCTGATAGTGGCAGTTATAGCAGCGGTTATATTTATGTTAGTCAAGTCTCGACAACGAAAACGGGACGATGATTTCAGCGTCCGAGACTCCAGCGTCGAAGAAGTCATGCAAGTGCACGTGCCGATAAATAGATCTTCGTCTGCATCCGAGAGAGTCGGGAGAAGGAACGTGGGAGAATCGGCGAAAAGAGGAGGAATGGGGGGTGGGACTAGAAATGGGCTAGGTGATCTTGTGATGGTGAATGATGAGAAGGGTTCATTTGGTTTACAGGATTTGATGAAAGCTGCTGCTGAGGTATTGGGGAATGGCGGATTGGGATCGGCTTATAAAGCTGCGATGGCGAACGGGATGAGTGTCGTTGTGAAGAGGATGAGGGAGATGAATAAAATCGGTAAAGACGTGTTTGATGCTGAGATGAGACAGTTTGGGAGGATTCGACATGCTAATATTTTGACTCCTTTGGCTTATCATTATAGGAGAGAAGAAAAGCTTTTTGTTACCGAGTACATGCCTAAAGGAAGCTTGTTATATGTCTTGCACGGTGATAGAGGATCGTCTCATGCGGAGTTAACTTGGCCTATCCGATTAAAGATTGCTAAAGGAATCGCGAGAGGTTTAAGCTTCCTATACAACGAGTTTTGCACGTATGATTTGCCTCATGGAAACCTGAAATCAAGCAATGTTCTAATAAACGATGAGTATGAGCCTCTGTTAAGTGACTATGCTTTTCAACCACTGATCAACCCGAGCATTGCAGTGCAATCAATGTTTGCATACAAAACACCAGATTACGTTCAAAACCAGAAGCTTACGCAGAAAGCCGATGTTTATTGCCTTGGAATCATCCTTCTTGAACTCGTAACGGGAAAATTCCCTTCTCAATATCATACTAATGGTAAAGGTGGGACTGATGTTGTTCAATGGGTTCTCACAGCGATTTCTGATAGAAGAGAAACTGAATTGATTGATCCTGAGTTACAAAAGAATGCATCAAATTCGATGAATAATATGCTCCAACTTCTCTTAATTGGTGCTGCTTGTACCGAAAGTAACCCAGAACAAAGAGTACACATGAAAGAAGCTATTAGAAGGATAGAGGACATACAACTCTAA 1893 0.4448 MAAAANHHLLLLFSLSLLSLSTAPPPPSETQSLLKLKLSLNNSDKNLASWIPNVSPCSGTWIGVICFNNVITGLHLSDLGLSGTIDVDAISEIRGLRTLSFVNNSFSGPIPQFHKLGTVKSLLLTQNNFSGPIPPDFFSHLSSLKKIWFSNNKFSGDIPVSLTELDLLKELHLEGNQFSGQLPNLRQDIKSFDVSNNKLEGPIPEGLSKFSAASFSGNGGLCGKPLEKQCVASSSSEYSLPDNVTENDSGSDLPLKLIMILIVAVIAAVIFMLVKSRQRKRDDDFSVRDSSVEEVMQVHVPINRSSSASERVGRRNVGESAKRGGMGGGTRNGLGDLVMVNDEKGSFGLQDLMKAAAEVLGNGGLGSAYKAAMANGMSVVVKRMREMNKIGKDVFDAEMRQFGRIRHANILTPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGSSHAELTWPIRLKIAKGIARGLSFLYNEFCTYDLPHGNLKSSNVLINDEYEPLLSDYAFQPLINPSIAVQSMFAYKTPDYVQNQKLTQKADVYCLGIILLELVTGKFPSQYHTNGKGGTDVVQWVLTAISDRRETELIDPELQKNASNSMNNMLQLLLIGAACTESNPEQRVHMKEAIRRIEDIQL 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08631 630 MobiDBLite consensus disorder prediction 305 330 - -
Vifa1g08631 630 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 629 IPR046959 -
Vifa1g08631 630 Gene3D Phosphorylase Kinase; domain 1 331 429 - -
Vifa1g08631 630 Pfam Protein kinase domain 358 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08631 630 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Vifa1g08631 630 SUPERFAMILY Protein kinase-like (PK-like) 358 625 IPR011009 -
Vifa1g08631 630 ProSiteProfiles Protein kinase domain profile. 354 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08631 630 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Vifa1g08631 630 Gene3D Ribonuclease Inhibitor 187 233 IPR032675 -
Vifa1g08631 630 SUPERFAMILY L domain-like 49 210 - -
Vifa1g08631 630 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Vifa1g08631 630 Gene3D Transferase(Phosphotransferase) domain 1 430 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08631 Vifa-Chr1 1362391972 1362393986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08631 9 630 Receptor kinase-like Gene Family AT3G42880 51.027 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g08631 Pkinase 1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08631 - - gmx:100790660 794.267