Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08630 ATGGCTTTAGCCATTTCATCCACTTCATTATCAAGTTTTCCAAACAGAGAAATATGTCAAAAGGTTTTATATCAAGGAACTACAACAAGTTCATGGTTAAGTAGAAGAAGAACACTTACGATTAGAAATGCGAAAAAAGGTGTTTCCGATTTGTGTGTACCACTTCCTCCAGATAGGCCATTGTGGTTTCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGTCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGCTCTGATCCAGAGTTATTAAAATGGTTTGCACAAGCAGAACTAGTACATGGAAGATGGGCAATGTTAGGAGTATCAGGAATCCTAATCCCCGAGATACTCGAAGGAATGGGCTACGTAAAAAACTTCTCATGGTACAATGCAGGTGGACTTTGGTTCGATCCTATGCAGTGGGGAAGAGGGTCACCTGAGCCTGTTATGGTTTTGAGGACTAAAGAGATTAAGAATGGAAGACTTGCTATGCTTGCTTTTGTTGGGTTTTGTTTTCAAGCTGTTTATGTTGGAGATAGTCCTATTCAGAATTTGATGGCTCATCTTGCTGATCCCGGTCACTGCAACATTTTCTCGGCTTTCACTTCAAGGTAG 627 0.4147 MALAISSTSLSSFPNREICQKVLYQGTTTSSWLSRRRTLTIRNAKKGVSDLCVPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELVHGRWAMLGVSGILIPEILEGMGYVKNFSWYNAGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYVGDSPIQNLMAHLADPGHCNIFSAFTSR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08630 208 Pfam Chlorophyll A-B binding protein 134 178 IPR022796 -
Vifa1g08630 208 Pfam Chlorophyll A-B binding protein 68 135 IPR022796 -
Vifa1g08630 208 Gene3D Chlorophyll a/b binding protein domain 60 135 - -
Vifa1g08630 208 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 20 136 IPR001344 GO:0009765|GO:0016020
Vifa1g08630 208 SUPERFAMILY Chlorophyll a-b binding protein 58 207 - -
Vifa1g08630 208 Gene3D Chlorophyll a/b binding protein domain 136 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08630 Vifa-Chr1 1362389333 1362390912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08630 44 208 Chloroplast and Mitochondria Gene Families AT3G61470 46.154 9.77e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08630 K08908 - gmx:100800374 305.064