Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08627 ATGTCTACCTCATCGGAACTCTCCGAGGTTTCCGGCCAGAAACCGGCGAGGTCGCCGGAGAAGACAACTTTCTCTCAGACTTGCAGTTTACTGAGTCAGTATATCAAGGAGAAGGGGAGCTTCAAAGATCTTTCTCTCGGTATGTCATGCAACAACAACACCGAAACTACTGGGTGTGTTGAGAGTTCTTCTCAATTAGGAACAACTATGAACTTGTTTCCAACCATGGAAAATAACTTGGGACCAAAGAATCATACTACTATGGATTTGCTTTCTCCACAAGCTGCCTTGAACAACTCCAATGCTAATAAGGGACCTAAAGCTGCACAATTGACAATGTTTTACAATGGCCAAGTTATTGTATTCGACGATTTCCCAGCTGACAAAGCACAAGAGCTCATGGTTTTTGCTAACAAAGGAATCTCTGAAAGTCAGAACAACAATTCTTTGTACACTTACGCACAAAGCCAGCCTTCATTTCCTCAGAATTTGGTCAGAACTTCTGTTGACCCCATCGCTCCAATTGTTCCGACAGTGAACAACATCGTCCCTAGCACCTGCAACGGGCCGATTCATGAACATCCTCAAGTGCTTTCCAGACCTAACGTTTGCGATCTTCCAATTATGAGGAAAGCTTCTCTTCATCGGTTCCTCGAGAAGAGAAAGGATAGAGTTGCTTCCAAGTCACCATATCAGAGAACAAATGCAATGGAGAGTATTAACAAGCAAGGTGAAAACATGTCATGGCTTGTGGGTGCAAAATCAACTCAAATCTGA 777 0.435 MSTSSELSEVSGQKPARSPEKTTFSQTCSLLSQYIKEKGSFKDLSLGMSCNNNTETTGCVESSSQLGTTMNLFPTMENNLGPKNHTTMDLLSPQAALNNSNANKGPKAAQLTMFYNGQVIVFDDFPADKAQELMVFANKGISESQNNNSLYTYAQSQPSFPQNLVRTSVDPIAPIVPTVNNIVPSTCNGPIHEHPQVLSRPNVCDLPIMRKASLHRFLEKRKDRVASKSPYQRTNAMESINKQGENMSWLVGAKSTQI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08627 258 SMART tify_2 104 139 IPR010399 -
Vifa1g08627 258 Pfam tify domain 106 137 IPR010399 -
Vifa1g08627 258 ProSiteProfiles Tify domain profile. 104 139 IPR010399 -
Vifa1g08627 258 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g08627 258 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 236 IPR040390 -
Vifa1g08627 258 Pfam Jas motif 207 232 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08627 Vifa-Chr1 1361285203 1361287474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08627 1 250 Tify Gene Family AT1G19180 40.221 6.25e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa1g08627 tify 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08627 K13464 - gmx:100801449 296.589