Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08621 ATGGTGAAATCGAATGTGGAGAAACCTGCAGGAAAACGAAGTGATTCATTGTTCCGAGGAGTGAGGAAGAGAAAGTGGGGAAAATATGTGTCGGAAATCAGATTACCAAACAGCCGTCAAAGAATATGGTTAGGTTCTTATGACACCGCAGAGAAAGCGGCGCGTGCATTTGACGCCGCTACGTTCTGCTTACGTGGCAGTGGAGCTAGGTTTAATTTTCCAAATAATCCACCGGATATTGCCGGAGGAAGGTCCATGACCCATTCGGAGATTCAAGCAGCTGCCGCCCGGTTTGCCAATTCGGAGCTCTGTAATGAGTATTCGGGTCGAAACGATAATACCCCAGATCAAACACTATCTTCGTCGTTGGAGACACCAATCACACCATTGTTGCCTATGGAGTTGCCATCTCCTGCTCTTTCTGATGCGACGGTTCAAACGGAGAGTGACATAACAGACAGTGAATTGTTTAAGGATATGTTTTTAGATACCGGGTCTGGTTACACTATGTTTCCAGGTTTTGATGATTTTTGTGGCGATTTCTACGTGCCGGAGTTCACAAATTTTGATTATGAACAAGACAACATGGATGGGTTGATAATTGACGATTCCTTTCTATGGAGTTTCTAA 630 0.446 MVKSNVEKPAGKRSDSLFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDTAEKAARAFDAATFCLRGSGARFNFPNNPPDIAGGRSMTHSEIQAAAARFANSELCNEYSGRNDNTPDQTLSSSLETPITPLLPMELPSPALSDATVQTESDITDSELFKDMFLDTGSGYTMFPGFDDFCGDFYVPEFTNFDYEQDNMDGLIIDDSFLWSF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08621 209 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Vifa1g08621 209 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Vifa1g08621 209 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Vifa1g08621 209 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Vifa1g08621 209 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Vifa1g08621 209 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vifa1g08621 209 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vifa1g08621 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 141 - -
Vifa1g08621 209 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Vifa1g08621 209 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08621 Vifa-Chr1 1359110575 1359111204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08621 16 209 AP2-EREBP Transcription Factor Family AT1G19210 45.588 2.68e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g08621 AP2 1.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08621 - - mtr:11441685 295.049