Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08620 ATGGTGAAAACAAATGAGGAGAAACTTGCGGCGGAAAGAAGTGATTCATTGTTTCGAGGAGTGAGGAAGAGGAAGTGGGGAAAGTATGTGTCGGAAATCAAATTGCCAAACAGCCGTCAAAGAATATGGTTAGGTTCTTATGACACCGCAGAGAAAGCGGCGCGTGCATTTGACGCGGCTACGTTCTGCATACGTGGCAGTGGTGTAAGGATTAGTTTCTCTAGTAATATTCCCGATATTGCCGGAGGAAGGTTCATGAGCCATTTTGACATTCAATCCGCCGCCACCCGTTTTGCCAACTCGGAGCCCCACAATGAGTGTTCGGTTCGACCCAATAATACTCCATCAGATGAAACACTACCTTCGTCGTTGGAGACACCAATCACACCATTGTTGCCTATGGAGTTGCCATCTCCTGATCTTTCTGATGCGACGGTTCAAACGGAGAGTGACATAACAGACAATAAATTGTTTAAGGATATGTTTTTAGACACCGGGTCGGGTTACTCTATGTTTCCGGGGTTTGATGATTTTTGTGGCGATTTCTACGTGCCGGAGTTCACAAATTTTAATTATGAAGAAGGCAACATGGATGGGTTAATAATTCACCATTCATTGTTATGGAGTTTCTAA 633 0.4439 MVKTNEEKLAAERSDSLFRGVRKRKWGKYVSEIKLPNSRQRIWLGSYDTAEKAARAFDAATFCIRGSGVRISFSSNIPDIAGGRFMSHFDIQSAATRFANSEPHNECSVRPNNTPSDETLPSSLETPITPLLPMELPSPDLSDATVQTESDITDNKLFKDMFLDTGSGYSMFPGFDDFCGDFYVPEFTNFNYEEGNMDGLIIHHSLLWSF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08620 210 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Vifa1g08620 210 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Vifa1g08620 210 MobiDBLite consensus disorder prediction 101 121 - -
Vifa1g08620 210 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Vifa1g08620 210 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Vifa1g08620 210 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vifa1g08620 210 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vifa1g08620 210 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Vifa1g08620 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 124 - -
Vifa1g08620 210 CDD AP2 16 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08620 Vifa-Chr1 1359042192 1359042824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08620 16 182 AP2-EREBP Transcription Factor Family AT1G19210 43.023 2.39e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g08620 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08620 - - mtr:11441685 258.84