Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08614 ATGGTGAAGACCAACATTGAACAACAACCTGCGGCGGAACGAAGTGATTCGGTTTACCGAGGAGTGAGGAAGAGGAAATGGGGAAAATATGTGTCGGAAATCAGACTACCGAACAGCCGTCAGAGGATATGGTTAGGTTCTTATGACTCTGCTGAGAAGGCGGCGCGTGCATTCGACGCGGCTATGTTTTGCTTACGTGGCAGTGGTGCACGGTTTAATTTTCCGGGTAATATTCCTGAGATAGCTGGAGGAAGGTCTATGACTCCTTCTCAGATTCAGGCTGCTGCAGCCCGTTTTGCGAATTCTTACATTCATGATACGGATCCGGGTCAACCCGATAATAATTTGGTGGAGTCTCCTTCTGAGGGAACTGCATTGTTGTTGCCTATGGAATCGGAATCACTGTCTCCGGCGGTTTCGGAATCGACGTTTCAGATGGATTGTGATTCGAAGCAAAATGGGTTGTTTTCGGATTTGTTTGCTGTGAACGGGTCGGGTAATAGTGAACCCGATTACTCAAATTTTCCGAGTTTTGATGATTTTGGAGGGGATTTTTATGTTCCGGAGCTTCCTAATTATGATTATGGAGAAGAGAATTTGGATGGATTAATAATTAACGATACTTTTTTATGGAATTTCTAA 642 0.4455 MVKTNIEQQPAAERSDSVYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGARFNFPGNIPEIAGGRSMTPSQIQAAAARFANSYIHDTDPGQPDNNLVESPSEGTALLLPMESESLSPAVSESTFQMDCDSKQNGLFSDLFAVNGSGNSEPDYSNFPSFDDFGGDFYVPELPNYDYGEENLDGLIINDTFLWNF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08614 213 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vifa1g08614 213 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vifa1g08614 213 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vifa1g08614 213 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Vifa1g08614 213 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Vifa1g08614 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 140 - -
Vifa1g08614 213 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Vifa1g08614 213 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Vifa1g08614 213 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Vifa1g08614 213 FunFam Ethylene-responsive transcription factor 2 17 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08614 Vifa-Chr1 1358719981 1358720622 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08614 17 213 AP2-EREBP Transcription Factor Family AT1G19210 48.020 6.70e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g08614 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08614 - - mtr:11441685 256.914