Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g08614 | ATGGTGAAGACCAACATTGAACAACAACCTGCGGCGGAACGAAGTGATTCGGTTTACCGAGGAGTGAGGAAGAGGAAATGGGGAAAATATGTGTCGGAAATCAGACTACCGAACAGCCGTCAGAGGATATGGTTAGGTTCTTATGACTCTGCTGAGAAGGCGGCGCGTGCATTCGACGCGGCTATGTTTTGCTTACGTGGCAGTGGTGCACGGTTTAATTTTCCGGGTAATATTCCTGAGATAGCTGGAGGAAGGTCTATGACTCCTTCTCAGATTCAGGCTGCTGCAGCCCGTTTTGCGAATTCTTACATTCATGATACGGATCCGGGTCAACCCGATAATAATTTGGTGGAGTCTCCTTCTGAGGGAACTGCATTGTTGTTGCCTATGGAATCGGAATCACTGTCTCCGGCGGTTTCGGAATCGACGTTTCAGATGGATTGTGATTCGAAGCAAAATGGGTTGTTTTCGGATTTGTTTGCTGTGAACGGGTCGGGTAATAGTGAACCCGATTACTCAAATTTTCCGAGTTTTGATGATTTTGGAGGGGATTTTTATGTTCCGGAGCTTCCTAATTATGATTATGGAGAAGAGAATTTGGATGGATTAATAATTAACGATACTTTTTTATGGAATTTCTAA | 642 | 0.4455 | MVKTNIEQQPAAERSDSVYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGARFNFPGNIPEIAGGRSMTPSQIQAAAARFANSYIHDTDPGQPDNNLVESPSEGTALLLPMESESLSPAVSESTFQMDCDSKQNGLFSDLFAVNGSGNSEPDYSNFPSFDDFGGDFYVPELPNYDYGEENLDGLIINDTFLWNF | 213 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g08614 | 213 | PRINTS | Ethylene responsive element binding protein signature | 19 | 30 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g08614 | 213 | PRINTS | Ethylene responsive element binding protein signature | 41 | 57 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g08614 | 213 | ProSiteProfiles | AP2/ERF domain profile. | 18 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g08614 | 213 | Pfam | AP2 domain | 17 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g08614 | 213 | SUPERFAMILY | DNA-binding domain | 17 | 76 | IPR016177 | GO:0003677 | |
Vifa1g08614 | 213 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 13 | 140 | - | - | |
Vifa1g08614 | 213 | CDD | AP2 | 17 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g08614 | 213 | SMART | rav1_2 | 18 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa1g08614 | 213 | Gene3D | AP2/ERF domain | 18 | 76 | IPR036955 | GO:0003700|GO:0006355 | |
Vifa1g08614 | 213 | FunFam | Ethylene-responsive transcription factor 2 | 17 | 77 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g08614 | Vifa-Chr1 | 1358719981 | 1358720622 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g08614 | 17 | 213 | AP2-EREBP Transcription Factor Family | AT1G19210 | 48.020 | 6.70e-51 | 161 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Vifa1g08614 | AP2 | 1.6e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g08614 | - | - | mtr:11441685 | 256.914 |