Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08608 ATGAAGGCTCCTTCTAATGGTTACTTGCCTAATTCTGGTGAAGGTGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCCGGGCCATTGGTTTCTATACCTCCTGTCGGAAGTCTCGTTGTTTACTTTCCTCAAGGACACAGCGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCAGATTTCATACCAAGTTACCCTAATCTACCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTTCATGCTGACCCTGAAACCGATGAGGTCTACGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGTTGGCTTCAGACATGGGTCTAAAACAAAACCAACAACCTTCGGAGTTCTTTTGCAAAACACTAACAGCTAGTGACACTAGCACTCATGGTGGTTTTTCAGTGCCTCGTCGAGCTGCCGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCGCCAGCTCAGGAAATAGTGGCCAAAGATTTGCATGACACTACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGCACGAAAAGACTCTTCGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAACAACTTCTTTTAGGTATAAAGAGATCCAGTAGACAGCAACCAGCACTATCTTCATCGGTTATATCAAGTGACAGCATGCATATTGGTATTCTTGCTGCCGCGGCTCATGCTGCTTCGAATAACAGCCCATTTACTATATTTTATAATCCAAGGACCAGCCCGTGCGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCTTTGTACACTCATGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGATTCAGGCGTACGTAGATATATGGGTACAATCACTGGGATTAGTGACTTGGATCCCGTTCGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGTCCAAGCCGAGTTTCAATTTGGGATATTGAACCAGTTGTGACTCCTTTCTACATTTGCCCGCCTCCGTTTTTTAGGCCGAAGTTCCCCAAACAACCAGGAATGCCAGAAGACGAGTCTGAAATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTCGGAGATGATCTTGGCATGAAGGATGCCTCAAGTTCAATCTTCCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAGCAGAATAATAATAATAATCAATTTTCTAGTCCTCAGTCAGCGCTTTTACCTCCATCCATGCTTTCATCAAACACACTTCACAGTAACGGTAACCTTAACACTGATGATCCGTCCAAGATATTGAACTTTCAATCCCCTGCTGCACTCTCTGCTCCAAGTCTTCAATTTAACAAACCTAATTTACCAAACCAAGTCAATCAATTGCAACAGCCCCCGACCTCGTGGGCTCAGCAGCAGCAACAGCAGAAGATGCAATCATTGTTGCAAACGCCGTTAAACCAGCTGCAGCAACAACAGCAGCACAGGCACCTGCAGCTGGCAGGAGCGCAAAATCTGCCGCAGTCACAGCAACAACAGCCTCAACTAAATCAACATAATGCACAACAGCCTCAACAGCAACAGCAACAACAACAACCGTGTCAAAACGCGACTATGAATAATGGCACAGTTGGTTCTAACCAGATTTCAAACCAATGTGTGCAGCAACCAGTAACCTACTCTCAGCTTCAGCAGCAGTTACTCTCGGGAAGTATCCCAACGCAACAAAATTTCCAGTCCGTTGGCAAGAACGGATTGATAATGACATCCTCACCACAAGACTCGCAATTTCAGCAACAGATAGACTCGCAACAAGCTAGTCTCTTACAGCGGCAGCAGCAGCAACAACAAACTCAATTGCAACAATCTTCATTACAGTTATTGCAACAAAGTATGTTACAAAGGGCACCACAACAATCGCAAGTATCTCAAATTTTGCCGCAAAACATCTCGGACCAACAATCACAGATGCAGCTGCTACAGAAGTTGCAACAGCAACAGCAAGAACAGCAGCAACCTCTTTCCACGTCTTCCCCGCTTTTGCAGTCTCAGCTTCTGCAGCAACAGAATACTCACCAGCAATTGCTGCAGCTGCCTATTTCTCAGCATCAACCTCAACAGCTTGGCAACAACGCGTTTTCAATGGAGAAGCTTCTCAACAGCAATTACTCTTCTTCACCTCTCATGCATTCGCAGCAACTTCCCGCAAACCATCCCCAGAATACACAAAAGTCACCGACAAATACTAGACCTCCCTCCGCTTTTACAGATGGAGACGCCCCATCATGCTCCACTTCGCCGTCTACTAATAACTGTCAGACGTCACCTCCAAACCCCTTGAAAAGAAATCAACCAGACGCATTTGGAGGGCCTTCGTTAGTTGAAACCACCAATAACATGATGCAGGAGCTTCAAAGTAAGCCTGACATGCAGAATAAACATGAATTACACGGCGTAAAAGGACCTGAGAAGCAAAAGCACAAAGGGGCAATCAATGATCAGATGGAAGCTTCTTCCGGAACATCGTACAATATTGATCCTGTTAACATCCACCAGAACTTTCCACTCTCCAATTTCTACATGGATGGTGGTGATGTCCATTCACAACAACCTAGAAGTAATTTACCATTTGCCCCTAACCTTGATGAATTAACACCCGATCCTTTGCTTTCAAGAGGTTACGATTCTCCAAAAGATCTTCAAAACTTGTTGTCTAATTATGGCGGTGCTCCACGAGACATTGAAACCGAGCTGTCCACTGCTGATATAAGTTCACAGTCGTTTGGGGTACCGAACATGTCCTTTAAGCCCGGATGCTCAAACGATATTCCCATCACTGATACCGGTGTTTTGAACAATGGCTTATGGTCTAATCAAACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCGGTCGGAAGATGTATTGATGTCACCCGATACAAGGGATACGAAGAACTCCGAAACGATTTGGCTCGTATGTTTGGGATTGAAGGTCAGCTAGAAGATCCTCTAAGAACCGACTGGAAACTCGTATACGTGGATCACGAAAACGACATTCTTCTTGTAGGCGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGTTGAAGTACAACAAATGAGCTTGGAAGTGGACTTAGGTTATGTTCCAATCACCAATCAAGCTTGTAGTGGTTCAGAAAGTGGCAATGCTTGGAGAGCACAGTATGATGATAACTCGGCGGCCTCGTTCAACCGATGA 3366 0.4439 MKAPSNGYLPNSGEGGERKTINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNNNNQFSSPQSALLPPSMLSSNTLHSNGNLNTDDPSKILNFQSPAALSAPSLQFNKPNLPNQVNQLQQPPTSWAQQQQQQKMQSLLQTPLNQLQQQQQHRHLQLAGAQNLPQSQQQQPQLNQHNAQQPQQQQQQQQPCQNATMNNGTVGSNQISNQCVQQPVTYSQLQQQLLSGSIPTQQNFQSVGKNGLIMTSSPQDSQFQQQIDSQQASLLQRQQQQQQTQLQQSSLQLLQQSMLQRAPQQSQVSQILPQNISDQQSQMQLLQKLQQQQQEQQQPLSTSSPLLQSQLLQQQNTHQQLLQLPISQHQPQQLGNNAFSMEKLLNSNYSSSPLMHSQQLPANHPQNTQKSPTNTRPPSAFTDGDAPSCSTSPSTNNCQTSPPNPLKRNQPDAFGGPSLVETTNNMMQELQSKPDMQNKHELHGVKGPEKQKHKGAINDQMEASSGTSYNIDPVNIHQNFPLSNFYMDGGDVHSQQPRSNLPFAPNLDELTPDPLLSRGYDSPKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSNDIPITDTGVLNNGLWSNQTQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSVEVQQMSLEVDLGYVPITNQACSGSESGNAWRAQYDDNSAASFNR 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08608 1121 Coils Coil 680 700 - -
Vifa1g08608 1121 Gene3D - 290 361 - -
Vifa1g08608 1121 MobiDBLite consensus disorder prediction 476 510 - -
Vifa1g08608 1121 MobiDBLite consensus disorder prediction 426 464 - -
Vifa1g08608 1121 ProSiteProfiles PB1 domain profile. 994 1087 IPR000270 GO:0005515
Vifa1g08608 1121 MobiDBLite consensus disorder prediction 753 811 - -
Vifa1g08608 1121 CDD B3_DNA 126 218 IPR003340 GO:0003677
Vifa1g08608 1121 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1083 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa1g08608 1121 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vifa1g08608 1121 SUPERFAMILY CAD & PB1 domains 1007 1073 - -
Vifa1g08608 1121 FunFam Auxin response factor 125 229 - -
Vifa1g08608 1121 SMART B3_2 127 229 IPR003340 GO:0003677
Vifa1g08608 1121 Pfam AUX/IAA family 991 1080 IPR033389 -
Vifa1g08608 1121 FunFam Auxin response factor 290 362 - -
Vifa1g08608 1121 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa1g08608 1121 FunFam Auxin response factor 989 1083 - -
Vifa1g08608 1121 Gene3D - 989 1083 - -
Vifa1g08608 1121 MobiDBLite consensus disorder prediction 534 573 - -
Vifa1g08608 1121 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vifa1g08608 1121 Gene3D - 125 228 IPR015300 -
Vifa1g08608 1121 MobiDBLite consensus disorder prediction 753 824 - -
Vifa1g08608 1121 SUPERFAMILY DNA-binding pseudobarrel domain 117 256 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08608 Vifa-Chr1 1356608931 1356614360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08608 1 494 B3 DNA Binding Superfamily AT1G19220 81.579 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa1g08608 AUX_IAA 1.1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08608 K14486 - gmx:100804628 1560.43