Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08605 ATGATTCATTCATCTACGAAATCAGCGAAAGAGAAAGAAAACGATCGCGGCATCAGTTCGCACATCCTCACCCTCCATCGCCGTCTTCTCCACGCCTTAAACCTCGGAACTAGGTTTTTTGATGAGAAGACAAATAGATGGAAGTGGCAGTGCGTTAACATTGAAGTGCAGAAAAATGTACTCCGATCAATTTCTGCGTTTCTTGATTCTATTGCAGGTGATGCACGTGCCATGCGTCATTCCATTGTTAAGGAATCTGCCACTGATATTTTGGGAGCATTGTTATGGATTCTTCAATGCAAAAGTGAGCCCTTGTTAAGCATGGCATCAAATGTGGCTGTGAAGTTAGTTAGTGTTTTACCGAGTCAACAGTTGCAATTGCGATTGTTGGATCTTGTCTATTGTCTATCATCTTTGCTGTCTTCGCATCAAGTAGAAGTTGCAATACCCTCTGCTACTGCTTTGAATTTGGTAATCTCAAATTTGAGTGCTACGAGTGAGAAGGCCGTTATTGAAGCACTGAAAGAAACAGAGATTTCCATTTGCATTGTTCAAAATATAAAAGACTGTGGTGCGAAGAAAATTGAATATTTTATAGAGATGGCTTCACTTTTGAGTACAGTACTGTTGAGGTGGTCTTCATCTAGATTCCCTGTTTGTAATGATGTTGAACTTATGAAGGTTTTAGCAAACATGCATACAAAGACAGATAGTTCCATTAAACTTGTTCTTCTAAGGCTGTACACATCTTTAGCTTTATGTGATTCTGCAGTGCAAAAACTCATAGAGGGTGGAAAAGTATTTCTACAAATGATTGTGCAGGCGATGGGAAAATCAAACCCTCATGATGTTCGGATAGAGGGGTTTCGGCTTGCTCAATGTCTATTGAGATCCCAAGGAAATTGTTTAAAAGTAATGGATTTGTGTGGTGATGCACTTGTTGATGCCATAATTTGTGGGATGAGAGAGACAGGTCCGTCTTCCAAAAAAATTGAGAACAACTATGGTTCTATATTAGTGGAAGCATGTAAGCTGGCTCTAATTACTCGTTGGGCTGGCGATCATCATATCAGGTTTTGGAAACAAGGAATTGATAGAGTCCTCCTTAGTCTTCTGATTGAAAATATTCATGACCAATCAGTTGAACTTGTCTTGCCATTGGAAAAACAAATATCCATGGTGAAAGAGGGACTGAAAGTCAATTATCATGTTGCTCCGAGGAGTTATGTGTGGGACATTCTTGGGTGGCTTACAATTCATTGTGGAGAAAATTCAAACCCTTACAGTTATACCCATGAGAGTGAACTCCACATCAACTTACTAATTCTGTGTGCTTGCTTCACTTTTGTGGAAGCAATTCAAAAATGGTGCCGGATATGTCAAAATGATGTTGATGATAATTTTCAAAGTGAACCAGTATCAAGGGCTGTTCTGATGATGATATATTCTCCATGTAATTATATTTCTTCACATGCTAGATTTGTATTATCTGATATACTAAAGGTCAAAGGCAATCCATGCTTGAAAAACTCACTACATACCCTAGATTATATATCATCTTTGAAAAGCTATAGTTCATTTGATAAACTTCAACTTGTTATTAACTTAATTGGGTTAACTTGTCTTTCAAGTTTACCACAGTATCAAAGATGTATCATAGAAAGCAGAGGAATAAAGGCTGTTGTTCTTCTTGTGCAACGATGCTTAAGTAATGATATTCATGTGGAAAGGCCTGAAGTTGCTCCTCATTTGCATACTGTATTCCATAAAAGGTCTTGTTGCTGGATTGGTAAAGGAGGCTGGGAAGGTTCCAATATCCTCTTATTTTATGGTCTGTGGGGCTTAGCTGAATTTCTTCATCAGTGTTGCCTTTTACCAGACAATCCTCAGCAATTTACTAGAGAGGTGACAAACATTAACACTGAGTTAGTCAACAAACTTCATGAGATATGTAGTAGCACCTCTTTCAGTCCTGGAGTGAAATGGTATGTTTCTTACATTCTAAGTTATTTTGGATTTTATGGTTTCCCAAATGAATTTTCCAAAAGGATTGGGAAATCTCTTAATCAGGAAGGATATGCAGATTTGCGACTCATTGTAGCAAATGGGGATTCTGTGAGTGTTCATGGTGTTATTCTTGCTGTTCGATGTCCATCACTTCTACCTTCTCAAGTGTTATCTAGTAGTAAGAGTTCTAAAGAAATAACAGATTGTTTTGTTGGAGAGACCGTGAGAGAAGTTCGTTATTCTTCTCATGTTGATTATGAGGCATTGTTGTTATTGTTGGAATATGTGTATTTTGGACACTTATATGCAGCAGAAGAAGAAACTGTAAAGAAGCTCAAAGTTCTTGCTAAGCGTTGCAATCTACAACCTCTCTTGCAGCTGCTTTGTAGACAATCTCCAAAGTGGGGCGCACCTTTCCCCAGCTTTAATCTTACTTCGTCTCTTGATTCAGCTGGAAGTTATTTTTTTGATGTCATAATGGAAGCTAAGTCGAATGAGTTTGTTGGATGGACGTGTTATATATGTTCTCACCCAGTACCGCATTTGCATGCTCACAAAGTTGTATTGCAGTCTGGCTGTGACTATTTACAGGGTTTGTTCAGATCAGGAATGCAAGAGAGTCATTCACAAGTCATAAAGGTTGATATTAGCTGGGAAGCATTGGTTAAACTAGTACATTGGTTTTACTCTGATGAGCTTCCGAATCCACCTTCTGGTTGTTTGTGGCTTAACATGGATGATCAAGAAAAGCTATTCCATCTGCAGCAATATGTGGAGCTTTGTTGGCTTGGTGAGTTCTGGATTTTGGAAAGTATTCAGGAAGCCTGCTGGAATGCGATTATGTCTTGTCTTGATTCTTCTAAGCAGTTGTCCATTAAAATAATTAATATGGCTTATAAGCTCTCTTTGTGGAAGTTGGTTGACATTGCCGCAAATCTCATGGCTCCTTCATATAGGCAATTACGGGATTCTGGTGAACTTGAAGAATTTGATGAGGCACTAGTTCACTTCATTTATTCTGCTTCTATTGAACTTAACCATGAAGGTGAAAAACGCTTTAGTTGA 3072 0.3848 MIHSSTKSAKEKENDRGISSHILTLHRRLLHALNLGTRFFDEKTNRWKWQCVNIEVQKNVLRSISAFLDSIAGDARAMRHSIVKESATDILGALLWILQCKSEPLLSMASNVAVKLVSVLPSQQLQLRLLDLVYCLSSLLSSHQVEVAIPSATALNLVISNLSATSEKAVIEALKETEISICIVQNIKDCGAKKIEYFIEMASLLSTVLLRWSSSRFPVCNDVELMKVLANMHTKTDSSIKLVLLRLYTSLALCDSAVQKLIEGGKVFLQMIVQAMGKSNPHDVRIEGFRLAQCLLRSQGNCLKVMDLCGDALVDAIICGMRETGPSSKKIENNYGSILVEACKLALITRWAGDHHIRFWKQGIDRVLLSLLIENIHDQSVELVLPLEKQISMVKEGLKVNYHVAPRSYVWDILGWLTIHCGENSNPYSYTHESELHINLLILCACFTFVEAIQKWCRICQNDVDDNFQSEPVSRAVLMMIYSPCNYISSHARFVLSDILKVKGNPCLKNSLHTLDYISSLKSYSSFDKLQLVINLIGLTCLSSLPQYQRCIIESRGIKAVVLLVQRCLSNDIHVERPEVAPHLHTVFHKRSCCWIGKGGWEGSNILLFYGLWGLAEFLHQCCLLPDNPQQFTREVTNINTELVNKLHEICSSTSFSPGVKWYVSYILSYFGFYGFPNEFSKRIGKSLNQEGYADLRLIVANGDSVSVHGVILAVRCPSLLPSQVLSSSKSSKEITDCFVGETVREVRYSSHVDYEALLLLLEYVYFGHLYAAEEETVKKLKVLAKRCNLQPLLQLLCRQSPKWGAPFPSFNLTSSLDSAGSYFFDVIMEAKSNEFVGWTCYICSHPVPHLHAHKVVLQSGCDYLQGLFRSGMQESHSQVIKVDISWEALVKLVHWFYSDELPNPPSGCLWLNMDDQEKLFHLQQYVELCWLGEFWILESIQEACWNAIMSCLDSSKQLSIKIINMAYKLSLWKLVDIAANLMAPSYRQLRDSGELEEFDEALVHFIYSASIELNHEGEKRFS 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08605 1023 SMART BTB_4 694 805 IPR000210 GO:0005515
Vifa1g08605 1023 SMART BTB_4 825 953 IPR000210 GO:0005515
Vifa1g08605 1023 Gene3D - 35 384 IPR011989 -
Vifa1g08605 1023 ProSiteProfiles BTB domain profile. 694 774 IPR000210 GO:0005515
Vifa1g08605 1023 Pfam BTB/POZ domain 686 796 IPR000210 GO:0005515
Vifa1g08605 1023 Pfam BTB/POZ domain 850 910 IPR000210 GO:0005515
Vifa1g08605 1023 CDD BTB_POZ_ZBTB_KLHL-like 850 923 - -
Vifa1g08605 1023 Gene3D Potassium Channel Kv1.1; Chain A 820 993 IPR011333 -
Vifa1g08605 1023 PANTHER OS06G0674800 PROTEIN 3 1017 IPR044953 -
Vifa1g08605 1023 Gene3D Potassium Channel Kv1.1; Chain A 676 801 IPR011333 -
Vifa1g08605 1023 ProSiteProfiles BTB domain profile. 825 906 IPR000210 GO:0005515
Vifa1g08605 1023 SUPERFAMILY ARM repeat 56 504 IPR016024 -
Vifa1g08605 1023 SUPERFAMILY POZ domain 850 950 IPR011333 -
Vifa1g08605 1023 SUPERFAMILY POZ domain 673 798 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08605 Vifa-Chr1 1356102482 1356108091 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa1g08605 BTB 1.6e-07 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08605 - - mtr:25487018 1818.51