Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08604 ATGATTCATTCATCTACGAAATCAGCGAAAGAGAAAGAAAACGATCGCGGCATCAGTTCGCACATCCTCACCCTCCATCGCCGTCTTCTCCACGCCTTAAACCTCGGAACTAGGTTTTTTGATGAGAAGACAAATAGATGGAAGTGGCAGTGCGTTAACATTGAAGTGCAGAAAAATGTACTCCGATCAATTTCTGCGTTTCTTGATTCTATTGCAGGTGATGCACGTGCCATGCGTCATTCCATTGTTAAGGAATCTGCCACTGATATTTTGGGAGCATTGTTATGGATTCTTCAATGCAAAAGTGAGCCCTTGTTAAGCATGGCATCAAATGTGGCTGTGAAGTTAGTTAGTGTTTTACCGAGTCAACAGTTGCAATTGCGATTGTTGGATCTTGTCTATTGTCTATCATCTTTGCTGTCTTCGCATCAAGTAGAAGTTGCAATACCCTCTGCTACTGCTTTGAATTTGGTAATCTCAAATTTGAGTGCTACGAGTGAGAAGGCCGTTATTGAAGCACTGAAAGAAACAGAGATTTCCATTTGCATTGTTCAAAATATAAAAGACTGTGGTGCGAAGAAAATTGAATATTTTATAGAGATGGCTTCACTTTTGAGTACAGTACTGTTGAGGTGGTCTTCATCTAGATTCCCTGTTTGTAATGATGTTGAACTTATGAAGGTTTTAGCAAACATGCATACAAAGACAGATAGTTCCATTAAACTTGTTCTTCTAAGGCTGTACACATCTTTAGTGCAAAAACTCATAGAGGGTGGAAAAGTATTTCTACAAATGATTGTGCAGGCGATGGGAAAATCAAACCCTCATGATGTTCGGATAGAGGGGTTTCGGCTTGCTCAATGTCTATTGAGATCCCAAGGAAATTGTTTAAAAGTAATGGATTTGTGTGGTGATGCACTTGTTGATGCCATAATTTGTGGGATGAGAGAGACAGGTCCGTCTTCCAAAAAAATTGAGAACAACTATGGTTCTATATTAGTGGAAGCATGTAAGCTGGCTCTAATTACTCGTTGGGCTGGCGATCATCATATCAGGTTTTGGAAACAAGGAATTGATAGAGTCCTCCTTAGTCTTCTGATTGAAAATATTCATGACCAATCAGTTGAACTTGTCTTGCCATTGGAAAAACAAATATCCATGGTGAAAGAGGGACTGAAAGTCAATTATCATGTTGCTCCGAGGAGTTATGTGTGGGACATTCTTGGGTGGCTTACAATTCATTGTGGAGAAAATTCAAACCCTTACAGTTATACCCATGAGAGTGAACTCCACATCAACTTACTAATTCTGTGTGCTTGCTTCACTTTTGTGGAAGCAATTCAAAAATGGTGCCGGATATGTCAAAATGATGTTGATGATAATTTTCAAAGTGAACCAGTATCAAGGGCTGTTCTGATGATGATATATTCTCCATGTAATTATATTTCTTCACATGCTAGATTTGTATTATCTGATATACTAAAGGTCAAAGGCAATCCATGCTTGAAAAACTCACTACATACCCTAGATTATATATCATCTTTGAAAAGCTATAGTTCATTTGATAAACTTCAACTTGTTATTAACTTAATTGGGTTAACTTGTCTTTCAAGTTTACCACAGTATCAAAGATGTATCATAGAAAGCAGAGGAATAAAGGCTGTTGTTCTTCTTGTGCAACGATGCTTAAGTAATGATATTCATGTGGAAAGGCCTGAAGTTGCTCCTCATTTGCATACTGTATTCCATAAAAGGTCTTGTTGCTGGATTGGTAAAGGAGGCTGGGAAGGTTCCAATATCCTCTTATTTTATGGTCTGTGGGGCTTAGCTGAATTTCTTCATCAGTGTTGCCTTTTACCAGACAATCCTCAGCAATTTACTAGAGAGGTGACAAACATTAACACTGAGTTAGTCAACAAACTTCATGAGATATGTAGTAGCACCTCTTTCAGTCCTGGAGTGAAATGGTATGTTTCTTACATTCTAAGTTATTTTGGATTTTATGGTTTCCCAAATGAATTTTCCAAAAGGATTGGGAAATCTCTTAATCAGGAAGGATATGCAGATTTGCGACTCATTGTAGCAAATGGGGATTCTGTGAGTGTTCATGGTGTTATTCTTGCTGTTCGATGTCCATCACTTCTACCTTCTCAAGTGTTATCTAGTAGTAAGAGTTCTAAAGAAATAACAGATTGTTTTGTTGGAGAGACCGTGAGAGAAGTTCGTTATTCTTCTCATGTTGATTATGAGGCATTGTTGTTATTGTTGGAATATGTGTATTTTGGACACTTATATGCAGCAGAAGAAGAAACTGTAAAGAAGCTCAAAGTTCTTGCTAAGCGTTGCAATCTACAACCTCTCTTGCAGCTGCTTTGTAGACAATCTCCAAAGTGGGGCGCACCTTTCCCCAGCTTTAATCTTACTTCGTCTCTTGATTCAGCTGGAAGTTATTTTTTTGATGTCATAATGGAAGCTAAGTCGAATGAGTTTGTTGGATGGACGTGTTATATATGTTCTCACCCAGTACCGCATTTGCATGCTCACAAAGTTGTATTGCAGTCTGGCTGTGACTATTTACAGGGTTTGTTCAGATCAGGAATGCAAGAGAGTCATTCACAAGTCATAAAGGTTGATATTAGCTGGGAAGCATTGGTTAAACTAGTACATTGGTTTTACTCTGATGAGCTTCCGAATCCACCTTCTGGTTGTTTGTGGCTTAACATGGATGATCAAGAAAAGCTATTCCATCTGCAGCAATATGTGGAGCTTTGTTGGCTTGGTGAGTTCTGGATTTTGGAAAGTATTCAGGAAGCCTGCTGGAATGCGATTATGTCTTGTCTTGATTCTTCTAAGCAGTTGTCCATTAAAATAATTAATATGGCTTATAAGCTCTCTTTGTGGAAGTTGGTTGACATTGCCGCAAATCTCATGGCTCCTTCATATAGGCAATTACGGGATTCTGGTGAACTTGAAGAATTTGATGAGGCACTAGTTCACTTCATTTATTCTGCTTCTATTGAACTTAACCATGAAGGTGAAAAACGCTTTAGTTGA 3054 0.3847 MIHSSTKSAKEKENDRGISSHILTLHRRLLHALNLGTRFFDEKTNRWKWQCVNIEVQKNVLRSISAFLDSIAGDARAMRHSIVKESATDILGALLWILQCKSEPLLSMASNVAVKLVSVLPSQQLQLRLLDLVYCLSSLLSSHQVEVAIPSATALNLVISNLSATSEKAVIEALKETEISICIVQNIKDCGAKKIEYFIEMASLLSTVLLRWSSSRFPVCNDVELMKVLANMHTKTDSSIKLVLLRLYTSLVQKLIEGGKVFLQMIVQAMGKSNPHDVRIEGFRLAQCLLRSQGNCLKVMDLCGDALVDAIICGMRETGPSSKKIENNYGSILVEACKLALITRWAGDHHIRFWKQGIDRVLLSLLIENIHDQSVELVLPLEKQISMVKEGLKVNYHVAPRSYVWDILGWLTIHCGENSNPYSYTHESELHINLLILCACFTFVEAIQKWCRICQNDVDDNFQSEPVSRAVLMMIYSPCNYISSHARFVLSDILKVKGNPCLKNSLHTLDYISSLKSYSSFDKLQLVINLIGLTCLSSLPQYQRCIIESRGIKAVVLLVQRCLSNDIHVERPEVAPHLHTVFHKRSCCWIGKGGWEGSNILLFYGLWGLAEFLHQCCLLPDNPQQFTREVTNINTELVNKLHEICSSTSFSPGVKWYVSYILSYFGFYGFPNEFSKRIGKSLNQEGYADLRLIVANGDSVSVHGVILAVRCPSLLPSQVLSSSKSSKEITDCFVGETVREVRYSSHVDYEALLLLLEYVYFGHLYAAEEETVKKLKVLAKRCNLQPLLQLLCRQSPKWGAPFPSFNLTSSLDSAGSYFFDVIMEAKSNEFVGWTCYICSHPVPHLHAHKVVLQSGCDYLQGLFRSGMQESHSQVIKVDISWEALVKLVHWFYSDELPNPPSGCLWLNMDDQEKLFHLQQYVELCWLGEFWILESIQEACWNAIMSCLDSSKQLSIKIINMAYKLSLWKLVDIAANLMAPSYRQLRDSGELEEFDEALVHFIYSASIELNHEGEKRFS 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08604 1017 ProSiteProfiles BTB domain profile. 819 900 IPR000210 GO:0005515
Vifa1g08604 1017 Pfam BTB/POZ domain 680 790 IPR000210 GO:0005515
Vifa1g08604 1017 Pfam BTB/POZ domain 844 904 IPR000210 GO:0005515
Vifa1g08604 1017 SMART BTB_4 819 947 IPR000210 GO:0005515
Vifa1g08604 1017 SMART BTB_4 688 799 IPR000210 GO:0005515
Vifa1g08604 1017 CDD BTB_POZ_ZBTB_KLHL-like 844 917 - -
Vifa1g08604 1017 Gene3D Potassium Channel Kv1.1; Chain A 814 987 IPR011333 -
Vifa1g08604 1017 SUPERFAMILY ARM repeat 53 676 IPR016024 -
Vifa1g08604 1017 Gene3D Potassium Channel Kv1.1; Chain A 670 795 IPR011333 -
Vifa1g08604 1017 ProSiteProfiles BTB domain profile. 688 768 IPR000210 GO:0005515
Vifa1g08604 1017 SUPERFAMILY POZ domain 844 944 IPR011333 -
Vifa1g08604 1017 SUPERFAMILY POZ domain 667 792 IPR011333 -
Vifa1g08604 1017 PANTHER OS06G0674800 PROTEIN 3 1011 IPR044953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08604 Vifa-Chr1 1356102482 1356108091 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa1g08604 BTB 1.6e-07 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08604 - - mtr:25487018 1801.56