Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08600 ATGGGGACGAAGATGAAGTCCAAAACGCAAGCGGTGAAAAACAAAGACAACGATAAGAAAGCCGTTGGTAATGGAACCAACAAAGAAGACAACGGTGTATTTGCTTCTTGCACCTTCTCTAGCCTTGGTCTTCACCCAACCTTATGTGACCAACTTCGTGAAAGGATGGGTTTTGAAGGTCCAACATTAGTGCAAGCTCAAGCCATTCCTATTGTTCTCTCTGGACGTCACGCACTGGTTAATGCTGCTACTGGTACGGGGAAGACTATTGCATACCTTGCTCCAATAATTCATCATTTACAGAGTAATGAAAAGCGAATTGAGCGATCCGATGGAACATTTGCGCTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTTCATGAAATTCTTCAGAAGTTATTGCACCGGTTTCATTGGATTGTTCCAGGCTACATTATGGGTGGGGAAAGTAGGTCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATTGCAACTCCCGGGCGTCTTTTAGATCACTTGAAGAATACAACATCATTCGTGCACACAAATTTGCGCTGGATAATTTTTGATGAAGCTGATCGTATTTTGGAATTAGGATTTGGAAAAGAGATACAAGAAATACTAAATCTTTTAGGTTCAATGAAGACTGGGCATGAGGACCAAGAGAATACAGTTACAAGACCCTCTAAATTTCAAAGACAGAATCTGCTTTTGTCGGCAACCTTAAATGAGAAAGTAAACCACCTTGCTAAAATTAGCTTAGAGGATCCAGTGATGATTGGTATTGATGATAAAACAATGGAACCGGCCTCAAAAATTAGATTTGCCCATTCAGATTCTGATGAAGACAATGAAGACAAGTTTTCCAATAAAATAGAAGCAGTTGGAGCTTATAAAGTGCCTGGACAGTTGATTCAGAGATATTTGAAGGTGCCTTGTGGATCACGGCTTGCTACACTTCTTTCAGTTCTAAAGCATCTTTTTGAAAGGGAGCCTTCACAAAAGGTTGTGGTATTCTTTTCAACATGTGATGCCGTGGACTTTCATTATACGGTGTTAACCGAATTCCTTTTCTCAGCACATCCACAAACAGAAGAAGGGAACAGACCAATTTTTCTTGGATGCAAAACTCTTCGGTTACATGGTAATATGGAACAGGAGGACAGGACGACCAGTTTTCAGGCCTTTAAAACTGATAAATCTGCTCTTCTATTGTCTACTGATGTTTCTGCCAGAGGTCTAGATTTTCCAAATGTTAGATGCATCATACAATATGATTCTCCTGGAGAAGCTACCGAATATGTGCATAGAGTTGGAAGAACTGCTCGACTGGGCGAAAGAGGAGAGTCATTGTTATTTCTGCAACCTGCTGAAATAGACTATTTACAAGACTTGAAGAAACACGGTGTCTCATTAACAGAGTATCCTCTCGTCAAAGTGTTGGACAGTTTCCCAATGTCTGGACACAAAAACATGAAGAATTCTGTTTTTATAGACATGCATCCCTGGATCATGTGTCTCCAGAAGGCACTCGAGTCCTTCGTCTCGTCCAAGCCCCATATGGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTCCGTGCATACACCGCACATCGTGGGGACTTGAAAAGAATATTTATGGTCAAGAAACTTCACTTGGGGCACGTCGCAAAAAGCTTTGCATTGAAACAAATCCCCTCTTTAGTTGGAAAATCATTCCAAAACCAAGCGAAGAAGAGAAAAAGATTTGAGAAGAAAAATGGGCCGTCAAATAAGAGAAAAGTTGCGCGACGGGTTAAGTAA 1821 0.4141 MGTKMKSKTQAVKNKDNDKKAVGNGTNKEDNGVFASCTFSSLGLHPTLCDQLRERMGFEGPTLVQAQAIPIVLSGRHALVNAATGTGKTIAYLAPIIHHLQSNEKRIERSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTTSFVHTNLRWIIFDEADRILELGFGKEIQEILNLLGSMKTGHEDQENTVTRPSKFQRQNLLLSATLNEKVNHLAKISLEDPVMIGIDDKTMEPASKIRFAHSDSDEDNEDKFSNKIEAVGAYKVPGQLIQRYLKVPCGSRLATLLSVLKHLFEREPSQKVVVFFSTCDAVDFHYTVLTEFLFSAHPQTEEGNRPIFLGCKTLRLHGNMEQEDRTTSFQAFKTDKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPAEIDYLQDLKKHGVSLTEYPLVKVLDSFPMSGHKNMKNSVFIDMHPWIMCLQKALESFVSSKPHMDELAKKAFCSWVRAYTAHRGDLKRIFMVKKLHLGHVAKSFALKQIPSLVGKSFQNQAKKRKRFEKKNGPSNKRKVARRVK 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08600 606 SMART helicmild6 352 450 IPR001650 -
Vifa1g08600 606 Pfam Domain of unknown function (DUF4217) 513 573 IPR025313 -
Vifa1g08600 606 MobiDBLite consensus disorder prediction 9 25 - -
Vifa1g08600 606 Pfam Helicase conserved C-terminal domain 328 450 IPR001650 -
Vifa1g08600 606 SMART DUF4217_3 511 576 IPR025313 -
Vifa1g08600 606 FunFam RNA helicase 2 267 - -
Vifa1g08600 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 471 IPR027417 -
Vifa1g08600 606 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g08600 606 Pfam DEAD/DEAH box helicase 63 253 IPR011545 GO:0003676|GO:0005524
Vifa1g08600 606 Gene3D - 2 268 IPR027417 -
Vifa1g08600 606 CDD DEADc_DDX31 48 266 - -
Vifa1g08600 606 Gene3D - 319 600 IPR027417 -
Vifa1g08600 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 497 IPR001650 -
Vifa1g08600 606 PANTHER RNA HELICASE 23 580 - -
Vifa1g08600 606 SMART ultradead3 57 279 IPR014001 -
Vifa1g08600 606 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 193 201 IPR000629 -
Vifa1g08600 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Vifa1g08600 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 265 IPR014001 -
Vifa1g08600 606 MobiDBLite consensus disorder prediction 582 606 - -
Vifa1g08600 606 CDD SF2_C_DEAD 309 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08600 Vifa-Chr1 1354793026 1354798506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08600 31 482 Eukaryotic Initiation Factors Gene Family AT3G19760 24.781 1.72e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08600 K14806 - gmx:100805157 948.347