Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08599 ATGGAAGTCAATCCCACGCTTCTGCAATTACTTCTCCTTCTTCTACCGTTGCTTCTTCTTCCTGGAACCGCTTCCAATGCGAATGTTAATGAAAGTTGTGGCCACTTCAATGGTTCACTCAATAGAGACACTAAAGCACCATGCCCAAATGGTTGGGTTATGGACCCTAATAAGACCAAATGCTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAGACATGTTGTAACAAATATGGTGGACATTTAGCATCATTATCATCGGTTCAAGAGCAACATTTTGCTCAAAGTCTTTGTGGCGAATCCATAAATAGTTGTTGGATTGGAGGAAGATTACTCAACAGCACTATAACGGGTTTTCAGTGGACATGGTCGGATAATTCTGAATGGAACAAGTCCATATTTCCTTTGGCTAATGTTCCACTTAATTGTACTGGAACCGGACGATCATGTCTTAGGAACAGTACATCTAATTTATGTGCCGTAATGACTAATAATTCAAAATCCCTCATGAGTGAGAGATGCGATAATCCTCATGCTTCTCTATGTATCCTGGACATAGATACGAAATGTAATCATATGCACTGCCACAGGGAATACCTTATAATCCTTGCAGTGGTGAGTGGCTTGATACTCTCAACAACATTAGCAGTTGTTGTCTGGCTTCTTGTATTTAAGCGAGGCAAAAAGAGAAGACGGTCTAGAAAACTATCTGATCCTGTCACTTCACTTCCATCATGGAAAGTCTATACCAAAGAGGAACTAAGGTCAATTACGAAAAATTTCAGTGAAGGAAACCGTCTTGCTGGGGATACCAAGACTGGTGGTACGTACAGTGGAGTCCAACCTGATGGCTCAAAGGTCGCTGTTAAGAGAATAAAGAGGTCAAGCTTTCAGAGGAAAAAGGAGTTCAATTCAGCAATTGGCAGGGTTGCAAAGCTTCGACATCCAAATCTGGTGGCTGTGATGGGGTGCTGCTATGATCACGGTGACCGCTATATTGTTTACGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGCTACATCACATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGCAAATTGCAACTACGCTTGCTCAAGGAATAGCGTTTCTACATGACAAAGTTAAGCCACAAGTTGTTCACCGAGACATACGAGCTAGTAATGTGCTGCTGGACGAGGAGTTTGGAGCGCATCTTATGGGTGTTGGCTTGTCCAAGTTTGTGCCGTATGAAGTAATGCATGAGAGGACTGTGATGGCGGGTGGAACCTATGGATATCTTGCTCCGGAGTTCGTGTACAGAAACGAGCTTACAACAAAGAGTGACGTTTATAGTTTTGGCGTCCTACTACTTGAAATAGTAAGTGGACGTAGACCAGCACAGGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCTACACCTCTTGTTCAAGCTCACCGCTACCCTGAACTCTTGGATCCTTATATATCTTCCTCGTCTACCAGTATCATCCCTGAGACTAGTGCTATCCAAAAGGTTGTTGACCTCGTTTATTCATGCACGCAGCATGTCCCTTCTATGCGGCCTAGAATGTCGCATGTTGTTCATCAGCTGCAACAGTTTGCCCAGCCACCTGCAAAATAA 1656 0.4378 MEVNPTLLQLLLLLLPLLLLPGTASNANVNESCGHFNGSLNRDTKAPCPNGWVMDPNKTKCFLHVGRPQSWNDSETCCNKYGGHLASLSSVQEQHFAQSLCGESINSCWIGGRLLNSTITGFQWTWSDNSEWNKSIFPLANVPLNCTGTGRSCLRNSTSNLCAVMTNNSKSLMSERCDNPHASLCILDIDTKCNHMHCHREYLIILAVVSGLILSTTLAVVVWLLVFKRGKKRRRSRKLSDPVTSLPSWKVYTKEELRSITKNFSEGNRLAGDTKTGGTYSGVQPDGSKVAVKRIKRSSFQRKKEFNSAIGRVAKLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMQIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPELLDPYISSSSTSIIPETSAIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFAQPPAK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08599 551 Pfam Lectin C-type domain 68 185 IPR001304 -
Vifa1g08599 551 SMART CLECT_2 48 186 IPR001304 -
Vifa1g08599 551 ProSiteProfiles Protein kinase domain profile. 265 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g08599 551 Gene3D Transferase(Phosphotransferase) domain 1 341 547 - -
Vifa1g08599 551 Gene3D Phosphorylase Kinase; domain 1 241 340 - -
Vifa1g08599 551 SUPERFAMILY C-type lectin-like 42 186 IPR016187 -
Vifa1g08599 551 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 341 551 - -
Vifa1g08599 551 Pfam Protein tyrosine and serine/threonine kinase 284 542 IPR001245 GO:0004672|GO:0006468
Vifa1g08599 551 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 118 544 - -
Vifa1g08599 551 Gene3D - 22 188 IPR016186 -
Vifa1g08599 551 ProSitePatterns Tyrosine protein kinases specific active-site signature. 387 399 IPR008266 GO:0004672|GO:0006468
Vifa1g08599 551 FunFam C-type lectin receptor-like tyrosine-protein kinase 242 340 - -
Vifa1g08599 551 SMART tyrkin_6 278 542 IPR020635 GO:0004713|GO:0006468
Vifa1g08599 551 ProSiteProfiles C-type lectin domain profile. 57 186 IPR001304 -
Vifa1g08599 551 SUPERFAMILY Protein kinase-like (PK-like) 237 542 IPR011009 -
Vifa1g08599 551 CDD CLECT 60 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08599 Vifa-Chr1 1354785124 1354788676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08599 78 548 Receptor kinase-like Gene Family AT1G52310 70.355 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Vifa1g08599 PK_Tyr_Ser-Thr 1.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08599 - - gmx:100779497 928.702