LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g08592	ATGGAAACTCATCTGACACTCACCCTTCTCTTCCTCTACTTCTTCTTAACTTTCTCATCCTCCGTCTTCGCCCATGACCAATCCCAACCCCAAGATCTAGTCCGTTCCTCATGCCTTCACGCCAGATACCCAAAGTTATGTCTCCGAACACTCTCCACCTACACCGGCCCCGCTAAAAGCCCACTGGACATAGCTCAAGCCGCACTCCGGGTAAGCCTAGCCCACGCCAAAAGAGTCTCCAAGTATATAGGAGCTTCTAATGCTGGTTCCCACAGCAGTAGCAGCTTAACGAAGCGACAGCAGGCTGATCTCAGTGACTGCAAAGAGCAGATAGCTGATTCCGTTGATGAACTCCGGAAGAGCTTGGAGGAGTTACAGCATATGCGACCGGAGACGTTCCGGTGGCAGATGAGCAATGCTATGACGTGGGTGAGTGCTGCTCTTACTGATGGGGATACTTGTCTTGATGGTAATGTGATGCCGGATGTGAAGAAGAGGGTTACTGATCTCGCAAGAGTGACGAGTAATGCTCTTTACATGATTAACCGTGTTGGATGA	558	0.5036	METHLTLTLLFLYFFLTFSSSVFAHDQSQPQDLVRSSCLHARYPKLCLRTLSTYTGPAKSPLDIAQAALRVSLAHAKRVSKYIGASNAGSHSSSSLTKRQQADLSDCKEQIADSVDELRKSLEELQHMRPETFRWQMSNAMTWVSAALTDGDTCLDGNVMPDVKKRVTDLARVTSNALYMINRVG	185

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g08592	185	FunFam	Pectinesterase inhibitor 3	29	185	-	-
	Vifa1g08592	185	NCBIfam	pectinesterase inhibitor domain	7	182	IPR006501	GO:0004857
	Vifa1g08592	185	CDD	PMEI-like_3	36	183	-	-
	Vifa1g08592	185	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	31	183	IPR035513	-
	Vifa1g08592	185	Gene3D	Invertase/pectin methylesterase inhibitor family protein	29	184	IPR035513	-
	Vifa1g08592	185	Coils	Coil	108	128	-	-
	Vifa1g08592	185	Pfam	Plant invertase/pectin methylesterase inhibitor	32	179	IPR006501	GO:0004857
	Vifa1g08592	185	SMART	PMEI_2	29	180	IPR006501	GO:0004857
	Vifa1g08592	185	PANTHER	PECTINESTERASE INHIBITOR-LIKE	9	179	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g08592	Vifa-Chr1	1353716940	1353717497	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g08592	33	181	Carbohydrate Esterase	AT3G14310	31.707	2.52e-15	71.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g08592	-		-	mtr:25486551	250.366