Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08590 ATGGGTGAGGGAAGAGGCAGTGTCAGTATCTCAAGTGTTATTACAATGCTAGTATTATGTATGTTTGTGTTTCATCCTAAGATGATTCATGCAGAAACATACATTGTTGGTGATGAGAAAGGTTGGTCTTTTGGTGTTCAAAATTGGCCTTCGGGAAAGGCTTTCAAGGAAGGCGATATACTTGTATTCAATTACACTCCTGTAATACATAATGTGGTGACAGTGAAAGAGTTTGGCTATAATTCGTGTGTGCCTTTTGGAGGATCTGGATTCCATATCTCTGGAGCAGATAAAATTACACTTGTTAAGGGAATGAACTATTTCATATGTGGAGTTCCCGGTCATTGTAGCTTGGGAATGAAAATTGCGGTCAATGCTAATTAA 384 0.3854 MGEGRGSVSISSVITMLVLCMFVFHPKMIHAETYIVGDEKGWSFGVQNWPSGKAFKEGDILVFNYTPVIHNVVTVKEFGYNSCVPFGGSGFHISGADKITLVKGMNYFICGVPGHCSLGMKIAVNAN 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08590 127 ProSiteProfiles Phytocyanin domain profile. 32 127 IPR003245 GO:0009055
Vifa1g08590 127 Gene3D - 30 127 IPR008972 -
Vifa1g08590 127 PANTHER BLUE COPPER PROTEIN 28 125 IPR039391 GO:0009055
Vifa1g08590 127 FunFam basic blue protein-like 32 126 - -
Vifa1g08590 127 SUPERFAMILY Cupredoxins 33 126 IPR008972 -
Vifa1g08590 127 Pfam Plastocyanin-like domain 47 120 IPR003245 GO:0009055
Vifa1g08590 127 CDD Plantacyanin 33 126 IPR041844 -
Vifa1g08590 127 ProSitePatterns Type-1 copper (blue) proteins signature. 104 120 IPR028871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08590 Vifa-Chr1 1353197910 1353198407 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08590 7 126 Phytocyanin Superfamily AT1G17800 37.600 5.85e-20 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08590 - - psat:127106281 187.193