Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08589 ATGGCGAAACCTGGCAGAGCTCGTCGCTCACCACCGTCAGGTTCCGTCTCCGGATCTTCCTCTCTCTCCTCCTCTTCCCGTTCCTCTTCTCGCTCTCGTTCTCGCTCCAGATCCTTCTCTTCCTCCTCCCGCAGTTCCAAGAGTCGCAGCCGGAGTCCTCCGCCTCAGAGACGCAAAAGTTCCACTGAACCATCCAGGCGAGGTCGTTCTCCCGCTCTTCCTCCACCTCCACAATCTAAGAAATCTTCTCCTCCCCCAAGGAAACCTTCTCCTGTACGCGAGTCTCTTGTTCTGCACGTTGAAAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATTTTCAGTAATTTTGGTGAGGTTGTAAGTGTAGAGTTGGTGATGGATAGAGCTGTTAATCTTCCAAAAGGATACGGGTATGTGCATTTCAAGACAAGAGGGGAAGCCGAAAAAGCATTAAATTTCATGGATGGTGCCCAAATAGATGGCAATGTCATTAAGGCAAGATTTACTCTACCTCCAAGACAGAAAGTTTCACCACCCCCAAAAGCTTCTGCTGTTGCTCCAAAGAGAGATGCACCTAGGACTGACAACGCTGGTGCAGATGTTGAAAAAGATGGGCCAAAGCGTCCTAGAGAATCTCCTCCGCGGAGAAAACTTCCTCCATCACCGCGAAGAAGATCTCCTGTGCCTCGAAGAGCTGGATCTCCTAGACGACCAGATTCTCCTCGACGCCGTGCAGATTCTCCTGTCCGTCGTCGATTAGATTCTCCTTATCGCCGTGGAGCTGGAGACACACCTCCTAGGAGGAGACCTGTGTCGCCTGGAAGAGGTCGTTCTCCATCTCCCCCACCTAGGCGTCTGAGATCCCCTGCAAGAGTCTCACCTCGAAGAATGCGTGGAAGCCCAGGCCCAGGGCGGAGACGTACTCCTCCTCCTCCTCCAAGACGCCGTTCACCTCCCAGACGAGCTCGTAGTCCTCCTAGAAGATCTCCAGTTGGTCGTAGGCGTAGCCGCTCTCCAATACGTAGATCTGCACGCTCTCGCTCAAGATCATTCTCACCTCGCAGAGGTCGGCCACCTATGAGACGGGGAAGGTCATCATCTTACTCGGATTCGCCAAGTCCTCGCAAGGTATCCCGAAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAAAGGAAGAGCTAGTAGTAACAGTAGCAGCAGCAGTTCACCACCACCAGCCCGCAAACCATAG 1242 0.5266 MAKPGRARRSPPSGSVSGSSSLSSSSRSSSRSRSRSRSFSSSSRSSKSRSRSPPPQRRKSSTEPSRRGRSPALPPPPQSKKSSPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALNFMDGAQIDGNVIKARFTLPPRQKVSPPPKASAVAPKRDAPRTDNAGADVEKDGPKRPRESPPRRKLPPSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRLDSPYRRGAGDTPPRRRPVSPGRGRSPSPPPRRLRSPARVSPRRMRGSPGPGRRRTPPPPPRRRSPPRRARSPPRRSPVGRRRSRSPIRRSARSRSRSFSPRRGRPPMRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLKGRASSNSSSSSSPPPARKP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08589 413 MobiDBLite consensus disorder prediction 196 221 - -
Vifa1g08589 413 CDD RRM_RNPS1 98 170 IPR034201 -
Vifa1g08589 413 MobiDBLite consensus disorder prediction 393 413 - -
Vifa1g08589 413 MobiDBLite consensus disorder prediction 1 93 - -
Vifa1g08589 413 Gene3D - 17 180 IPR012677 -
Vifa1g08589 413 SMART rrm1_1 97 170 IPR000504 GO:0003723
Vifa1g08589 413 MobiDBLite consensus disorder prediction 12 59 - -
Vifa1g08589 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 168 IPR000504 GO:0003723
Vifa1g08589 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Vifa1g08589 413 SUPERFAMILY RNA-binding domain, RBD 31 171 IPR035979 GO:0003676
Vifa1g08589 413 MobiDBLite consensus disorder prediction 238 268 - -
Vifa1g08589 413 MobiDBLite consensus disorder prediction 172 413 - -
Vifa1g08589 413 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 12 263 - -
Vifa1g08589 413 MobiDBLite consensus disorder prediction 312 364 - -
Vifa1g08589 413 FunFam Serine/arginine-rich splicing factor SR45 3 181 - -
Vifa1g08589 413 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08589 Vifa-Chr1 1353174857 1353181775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08589 98 171 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.01e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08589 K14325 - gmx:100783566 251.906