Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08588 ATGCCTCTGATTCCGTCTATCATCTTCGCTTCGAGCCACAAAGTATTCTTCGACATCAGTATCGGTAATCCAGTTGGAAAACTAGTGGGTAAGATTGTCATCGGACTCTTTGGGGACGATGTCCCCCAAACTACCGAGAACTTCCGGGCCCTTTGCACTGGTGACAAGGGTTTTGGCTACAAGAACTCCACCTTCCATCGTGTCATCAGAGACTTCATGGTTCAAGGAGGAGATTTCGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGCACTTTCAAAGATGAGAATTTTAAACTCTCTCATACTGGACCCGGAACTGTTAGTATGGCTAATGCAGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACCGTCAAGACGCAATGGCTTGATCAGAAACATGTTGTTTTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGATTGATTGAATCGCAAGAGACAGATCGTGGTGATCGTCCACGAAAGAAGGTTGTTATCAGTGACTGGGGTGAGCTGCCAATTGCTTGA 543 0.4549 MPLIPSIIFASSHKVFFDISIGNPVGKLVGKIVIGLFGDDVPQTTENFRALCTGDKGFGYKNSTFHRVIRDFMVQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGTVSMANAGPNTNGSQFFICTVKTQWLDQKHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVVISDWGELPIA 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08588 180 PIRSF Peptidylpro_ismrse 4 179 IPR024936 GO:0003755
Vifa1g08588 180 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 60 77 IPR020892 GO:0003755|GO:0006457
Vifa1g08588 180 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 16 176 IPR002130 GO:0000413|GO:0003755
Vifa1g08588 180 SUPERFAMILY Cyclophilin-like 8 177 IPR029000 -
Vifa1g08588 180 FunFam Peptidyl-prolyl cis-trans isomerase 8 180 - -
Vifa1g08588 180 Gene3D - 9 179 IPR029000 -
Vifa1g08588 180 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 14 176 - -
Vifa1g08588 180 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 29 174 IPR002130 GO:0000413|GO:0003755
Vifa1g08588 180 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 65 77 IPR002130 GO:0000413|GO:0003755
Vifa1g08588 180 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 123 135 IPR002130 GO:0000413|GO:0003755
Vifa1g08588 180 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 151 IPR002130 GO:0000413|GO:0003755
Vifa1g08588 180 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 IPR002130 GO:0000413|GO:0003755
Vifa1g08588 180 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 108 123 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08588 Vifa-Chr1 1353154004 1353154710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08588 30 171 U-box Gene Family AT5G67530 47.552 4.83e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08588 K03768 - csav:115714308 320.087