Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08569 ATGAATGGAGCTGAGATTTCAAATTTTGATCCTATCGTCTCTTTCTGCGAGACTCTGCTTAAGTTTAGCCATACCGTGATGAGCAAGTCACCAAACAAACAAAACCGTTTATACGTGAAAGCAAAGCCAATGGAGGAAGCGCTTGCAGAGGCCATTGTTGATGGAAAGATGAACCAAGGCAAGACTCCAAAAACCGTTCGAAAAGTGCTGTTCAATGAGTTTGGTTGGCATAAAGAACTTTCCAAAAAAAAAAATCAGACTTTTATTTACAACAAAAGCACTAAGTCAAAAATAGACAGATGTTGA 306 0.3856 MNGAEISNFDPIVSFCETLLKFSHTVMSKSPNKQNRLYVKAKPMEEALAEAIVDGKMNQGKTPKTVRKVLFNEFGWHKELSKKKNQTFIYNKSTKSKIDRC 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08569 101 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 3 85 - -
Vifa1g08569 101 Gene3D - 21 93 IPR014721 -
Vifa1g08569 101 SUPERFAMILY Ribosomal protein S5 domain 2-like 13 83 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08569 Vifa-Chr1 1350660005 1350660310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08569 1 83 Eukaryotic Initiation Factors Gene Family AT1G56070 58.333 6.12e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08569 K03234 - sind:105175070 102.449