Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08561 ATGACAAAACTTGCAAAACTAACAAAACTCAAGTCAGTGCTGAAGAAATGGAACACCTTCACCTATTACAACCACACCAACAAGCACAACCGCTCTGACACCAGAGCGGTTGTAAACGAGGACGAGTCGTGTGTGTCATCAGAACAAGGCCTTCGTCTCGTGTTTGTTGGAAAGACGAGGCGTAGATACCTTGTTAACTCTGATGTTGTTGGACATCCGCTATTTCAGGAGCTTGTGGACAGGTCTCGCAGCTCGGTCAAGGTAAACGATGAGGATGATACGGTTAATGTGGCATGTGAGGTTGTCCTGTTTGAACATATGTTGTGGATGATTGAAAATACTGATCCTCAACCGGAATCATTGGATGAACTCGTGGATTATTACAGTTGCTAG 393 0.4478 MTKLAKLTKLKSVLKKWNTFTYYNHTNKHNRSDTRAVVNEDESCVSSEQGLRLVFVGKTRRRYLVNSDVVGHPLFQELVDRSRSSVKVNDEDDTVNVACEVVLFEHMLWMIENTDPQPESLDELVDYYSC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08561 130 PANTHER EXPRESSED PROTEIN 28 129 - -
Vifa1g08561 130 Pfam Auxin responsive protein 10 111 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08561 Vifa-Chr1 1349447670 1349448062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08561 1 113 Calmodulin-binding Proteins AT3G43120 24.088 3.50e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08561 - - mtr:25486572 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08561 1 1349447670 1349448062 Vifa1g08561 1 1349447670 1349448062 ECH