Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g08557 | ATGGCTTCAAGATCTGTGGAAACTGAACCATCAACTCAAGCTGAAGACGATTACAATGTCATGCTTTCAACCACCGATGTTGAACTTCTCAAACGTGCTTGGCGTAACGAGAAGGCAGCCCCGGAGATTCTTCCTTTTCAATCCGATTTGATTGCCCGTGTCAGAGAACAAATTGAATTGATGGAAGAAACTATGGAGGAGAAATCTACTCTTGGGACTGACCCTCTTTCGGTATCCCTGTATCAAATGGATTTGGATAGAACCCTCTTTCTGTTGAGGTCGTATCTTCGTATCCGTATCTTGAAGATTGAAAAGTACATGTTCCACATCCAAAAAACTGATGAACTTTGGAACAGGCTTTCTAAGGATGAGAAATTTTTCACGGAAAGGTGCTCAGATGACTTAAAGAAACATCTGGAGGAGAGTGTTCTATCAAAACTGCCTGAAAATTATCAGTCTCGTGAGAGGCAATCCATAATTAGCGAAGAGGATGACATGAGACTCGATGTATTCAAATTTGATTTGCCTGAACTGAAATCAATCTGCAATAGGGTTCCAGAACCACGACTAGACACATTTGTGTTGTGTAGAAGTAAAGATTATCTCACAGGCATTCAGCTTGGAGACGGACCTGTTGATGACAGGTCAAAGCTGTTTGAAATGGAGGCGGGTGTCCTTTACTTTATATGTTACAAATCGATAAAGCCGCTTGTAGAGAGTGGCAAAATTGAACTGTTATAA | 741 | 0.4116 | MASRSVETEPSTQAEDDYNVMLSTTDVELLKRAWRNEKAAPEILPFQSDLIARVREQIELMEETMEEKSTLGTDPLSVSLYQMDLDRTLFLLRSYLRIRILKIEKYMFHIQKTDELWNRLSKDEKFFTERCSDDLKKHLEESVLSKLPENYQSRERQSIISEEDDMRLDVFKFDLPELKSICNRVPEPRLDTFVLCRSKDYLTGIQLGDGPVDDRSKLFEMEAGVLYFICYKSIKPLVESGKIELL | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g08557 | 246 | FunFam | DNA replication complex GINS protein SLD5 | 11 | 236 | - | - | |
| Vifa1g08557 | 246 | Gene3D | - | 12 | 236 | - | - | |
| Vifa1g08557 | 246 | Pfam | DNA replication complex GINS protein SLD5 C-terminus | 188 | 246 | IPR031633 | - | |
| Vifa1g08557 | 246 | SUPERFAMILY | GINS helical bundle-like | 23 | 158 | IPR036224 | - | |
| Vifa1g08557 | 246 | PIRSF | GINS_Sld5 | 1 | 246 | IPR008591 | GO:0006261 | |
| Vifa1g08557 | 246 | CDD | GINS_B_Sld5 | 188 | 246 | IPR031633 | - | |
| Vifa1g08557 | 246 | Coils | Coil | 51 | 71 | - | - | |
| Vifa1g08557 | 246 | SUPERFAMILY | PriA/YqbF domain | 190 | 246 | - | - | |
| Vifa1g08557 | 246 | CDD | GINS_A_Sld5 | 26 | 144 | IPR038749 | - | |
| Vifa1g08557 | 246 | PANTHER | SLD5 PROTEIN | 12 | 246 | IPR008591 | GO:0006261 | |
| Vifa1g08557 | 246 | Pfam | GINS complex protein | 59 | 125 | IPR021151 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa1g08557 | 1 | 166 | Core DNA Replication Machinery Family | AT5G49010 | 63.253 | 5.27e-66 | 201 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g08557 | K10735 | - | gmx:100784291 | 317.005 |