Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08555 ATGTCTGTGATTGCTCATGTTGATCATGGTAAATCAACTTTGACAGATTCCCTTGTTGCTGCTGCTGGAATTATAGCACAAGAGGTTGCTGGAGATGTCAGGATGACAGATACCCGTGCTGATGAAGCTGAGCGTGGTATCACTATTAAGTCTACTGGTATCTCTCTATACTATGAGATGACTGATGAATCTCTCAAGAGTTTTAAGGGGGAGCGTAATGGGAATGAGTATCTCATTAATCTCATTGATTCTCCTGGGCACGTTGATTTCTCATCTGAGGTTACTGCTGCACTCCGTATTACTGATGGAGCATTAGTGGTGGTGGATTGTGTTGAGGGAGTTTGTGTACAAACTGAAACTGTGCTGCGACAGGCTCTTGGAGAAAGGATTAGGCCTGTTCTTACCGTTAACAAGATGGACAGATGTTTTCTTGAGCTCCAAGTTGACGGAGAGGAGGCTTATCAGACCTTTTCAAGGGTTATTGAGAATGCCAATGTCATTATGGCTACCTATGAAGATCCTCTTCTTGGTGATGTTCAGGTGTATCCTGAGAAAGGAACTGTTGCTTTCTCTGCTGGTCTCCATGGATGGGCTTTTACTTTGACCAACTTTGCTAAGATGTATGCCTCCAAGTTTGGTGTTGATGAATCCAAAATGATGGAAAGACTATGGGGTGAAAATTTCTTTGATCCTGCTACTAAGAAGTGGACCACCAAGAATACCGGTTCAGCCACTTGCAAGCGTGGGTTTGTTCAGTTCTGTTATGAGCCTATCAAGCAGATTATTAACACATGTATGAACGATCAGAAGGATAAGTTGTGGCCTATGCTCACCAAGCTAGGGGTCACCATGAAGTCGGAGGAGAAGGACCTTATGGGTAAGCCATTGATGAAGCGTGTCATGCAGACCTGGCTCCCAGCAAGCACTGCACTACTTGAAATGATGATCTTTCATCTCCCTTCTCCACACACTGCTCAGAGGTATCGTGTTGAGAACTTGTACGAGGGTCCCCTTGATGATCAATATGCTACTGCTATCAGAAATTGTGATCCTGAGGGTCCTCTCATGCTTTATGTGTCCAAGATGATTCCAGCATCTGATAAAGGAAGGTTTTTTGCTTTTGGCCGTGTCTTTGCTGGTAAAGTTTCAACTGGTTTGAAGGTCAGAATTATGGGACCAAATTTTGTACCTGGGGAGAAGAAAGATTTGTATGTGAAGAGTGTTCAGAGAACTGTTATTTGGATGGGAAAGAGACAGGAGACTGTTGAGGATGTGCCTTGTGGTAACACAGTTGCCTTGGTTGGTTTGGATCAATTTATCACCAAGAATGCAACATTGACCAATGAGAAAGAAGTTGATGCACATCCTATTCGTGCTATGAAGTTTTCTGTCTCCCCTGTTGTGCGTGTTGCCGTTCAGTGTAAGGTTGCTTCAGATCTTCCTAAGCTTGTTGAAGGTCTTAAACGTCTTGCTAAGTCTGATCCTATGGTTGTCTGTACCATTGAGGAGTCTGGAGAACACATTGTTGCTGGTGCTGGAGAGCTTCATCTTGAGATCTGTTTGAAGGACTTGCAGGATGATTTCATGGGTGGAGCTGAAATTATCAAATCTGACCCTGTTGTGTCTTTCAGAGAGACTGTTCTTGAGAGGTCATGTCGCACAGTGATGAGTAAGTCACCAAACAAGCATAACCGTTTGTACATGGAAGCTAGACCACTGGAGGATGGGCTAGCAGAGGCCATTGATGATGGCAAAATTGGACCAAGGGATGATCCCAAGATTCGTTCTAAAATCTTGTCAGAAGAGTATGGCTGGGATAAGGATCTTGCTAAGAAAATCTGGTGTTTTGGACCTGAGACCACTGGACCCAACATGGTGGTTGATATGTGTAAGGGAGTTCAGTACTTGAATGAAATCAAGGATTCTGTGGTTGCAGGGTTCCAATGGGCATCAAAGGAAGGTGCTTTGTCAGAAGAAAACATGAGAGGCATCTGCTTTGAAGTTTGTGATGTTGTGTTGCACACTGATGCTATCCACAGAGGTGGTGGTCAGGTTATTCCTACTGCTAGGAGGGTCATATATGCTTCACAGATAACAGCCAAGCCCAGACTTCTTGAGCCTGTTTACATGGTTGAAATTCAAGCTCCTGAGCAAGCTCTTGGTGGTATATACAGTGTTCTTAATCAGAAACGTGGGCATGTGTTTGAAGAAATGCAGAGGCCTGGTACTCCACTTTACAATATCAAAGCATACCTTCCAGTTATTGAGTCCTTTGGATTCTCCAGCCAGTTGAGGGCGGCAACATCCGGTCAGGCTTTCCCCCAGTGTGTGTTTGATCACTGGGACATGATGTCCTCAGATCCATTGGAAGCTGGATCCCAAGCCGCAGTACTGGTTACTGATATTCGTAAGAGGAAGGGTTTGAAGGAGCAGATGACACCACTCTCTGATTTTGAAGACAAGATTTAA 2469 0.4435 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKSFKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLTKLGVTMKSEEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPHTAQRYRVENLYEGPLDDQYATAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGKVSTGLKVRIMGPNFVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVALVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGKIGPRDDPKIRSKILSEEYGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALSEENMRGICFEVCDVVLHTDAIHRGGGQVIPTARRVIYASQITAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMSSDPLEAGSQAAVLVTDIRKRKGLKEQMTPLSDFEDKI 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08555 822 Pfam Elongation factor G, domain IV 589 700 IPR005517 GO:0005525
Vifa1g08555 822 Gene3D Elongation Factor G (Translational Gtpase), domain 3 465 542 - -
Vifa1g08555 822 FunFam Elongation factor 2 201 305 - -
Vifa1g08555 822 Gene3D - 1 196 IPR027417 -
Vifa1g08555 822 FunFam Translation elongation factor 2 322 463 - -
Vifa1g08555 822 Gene3D Translation factors 322 463 - -
Vifa1g08555 822 CDD eEF2_snRNP_like_C 706 784 - -
Vifa1g08555 822 Pfam Elongation factor Tu GTP binding domain 1 321 IPR000795 GO:0003924|GO:0005525
Vifa1g08555 822 CDD EF2_II 354 449 - -
Vifa1g08555 822 Gene3D Yeast translation eEF2 (G' domain) 201 305 - -
Vifa1g08555 822 CDD EF2 1 209 - -
Vifa1g08555 822 FunFam Translation elongation factor 2 1 216 - -
Vifa1g08555 822 Pfam Elongation factor Tu domain 2 373 446 IPR004161 GO:0005525
Vifa1g08555 822 SUPERFAMILY EF-G C-terminal domain-like 706 816 IPR035647 -
Vifa1g08555 822 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 37 52 IPR031157 -
Vifa1g08555 822 SUPERFAMILY Ribosomal protein S5 domain 2-like 541 705 IPR020568 -
Vifa1g08555 822 SMART EFG_C_a 703 792 IPR000640 -
Vifa1g08555 822 SUPERFAMILY Translation proteins 321 455 IPR009000 -
Vifa1g08555 822 Pfam Elongation Factor G, domain III 466 528 IPR041095 -
Vifa1g08555 822 NCBIfam small GTP-binding protein domain 3 155 IPR005225 GO:0005525
Vifa1g08555 822 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 821 - -
Vifa1g08555 822 CDD EF2_snRNP_III 466 538 - -
Vifa1g08555 822 CDD aeEF2_snRNP_like_IV 538 709 - -
Vifa1g08555 822 PRINTS GTP-binding elongation factor signature 44 52 IPR000795 GO:0003924|GO:0005525
Vifa1g08555 822 PRINTS GTP-binding elongation factor signature 80 90 IPR000795 GO:0003924|GO:0005525
Vifa1g08555 822 PRINTS GTP-binding elongation factor signature 132 141 IPR000795 GO:0003924|GO:0005525
Vifa1g08555 822 PRINTS GTP-binding elongation factor signature 96 107 IPR000795 GO:0003924|GO:0005525
Vifa1g08555 822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 320 IPR027417 -
Vifa1g08555 822 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 323 IPR000795 GO:0003924|GO:0005525
Vifa1g08555 822 Gene3D - 702 822 - -
Vifa1g08555 822 Gene3D - 549 701 IPR014721 -
Vifa1g08555 822 SMART EFG_IV_2 584 701 IPR005517 GO:0005525
Vifa1g08555 822 SUPERFAMILY EF-G C-terminal domain-like 463 539 IPR035647 -
Vifa1g08555 822 FunFam Translation elongation factor 2 465 542 - -
Vifa1g08555 822 FunFam Translation elongation factor 2 548 701 - -
Vifa1g08555 822 FunFam Translation elongation factor 2 702 822 - -
Vifa1g08555 822 Pfam Elongation factor G C-terminus 703 790 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08555 Vifa-Chr1 1348383489 1348386439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08555 1 822 Eukaryotic Initiation Factors Gene Family AT1G56070 94.526 0.0 1637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08555 K03234 - gmx:100788357 1593.17