Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g08554 | ATGGGAAACAACGTTTGCATTCTTCATTGTGTTCCTATAAAAACCAAAAAAAGAAAGACCATAAAACAAAACCTCTCATCTCGATCACCACCTCAACCAACCCTAACCCTAGACAAATTTTTTGAAACCAATGAAATTACTATTCCCACTCCACTACCCATAGAAGGAGTCCCCTTTTATGATTGTGAAATATGCTATGAATCAAAGCCACTAAATGACTCATTCAACATAGAAGGTTGCACTCATTTCTTTTGCACAAAATGCACAATAAAATACATAGTTTCAAATCTACAACAAAACAAGGTTAAGCTAAATTGTCCCGGCCTAGGTTGTTCCGGAACATTGACTCCTCAATATTGCAAACCAATTTTACCTAACAATCTTATGGATTGGTGGGAGAAAGCTTTGAGTGAATCGGTGATTCCCGAAAGGAATAAATTCTATTGTCCTTTCTATGATTGTTCAGCACTTTTAATTAGCGAGGAAAATCGCGTAGGAGGAGTGATGCTAAATTCCATATATTCTACTTGTCCTCATTGCAATAGAAGGGTTTGTGTTAAGTGTAAAACTCCTTGGCATGAAGGTATGAGTTGTGAAAAGTTTCAAAGATTGAAGAATAGTAATGATGCTCTTATGGTTGATCTTGCCGGTAGAAGGAAATGGAAAAAATGTCCAAATTGTAAAAGTTTTGTTGAAAAAATTCAAGGATGCAATCACATTAATTGCAGGTGTTCTTATCAGTTTTGTTATCAATGTGGACGTGGCATTAGTCGTCTTAATCATGGTTGTAATCATAGAGATTGA | 804 | 0.357 | MGNNVCILHCVPIKTKKRKTIKQNLSSRSPPQPTLTLDKFFETNEITIPTPLPIEGVPFYDCEICYESKPLNDSFNIEGCTHFFCTKCTIKYIVSNLQQNKVKLNCPGLGCSGTLTPQYCKPILPNNLMDWWEKALSESVIPERNKFYCPFYDCSALLISEENRVGGVMLNSIYSTCPHCNRRVCVKCKTPWHEGMSCEKFQRLKNSNDALMVDLAGRRKWKKCPNCKSFVEKIQGCNHINCRCSYQFCYQCGRGISRLNHGCNHRD | 267 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g08554 | 267 | CDD | Rcat_RBR_unk | 220 | 253 | - | - | |
Vifa1g08554 | 267 | ProSiteProfiles | Zinc finger RING-type profile. | 62 | 107 | IPR001841 | - | |
Vifa1g08554 | 267 | FunFam | RBR-type E3 ubiquitin transferase | 58 | 143 | - | - | |
Vifa1g08554 | 267 | SUPERFAMILY | RING/U-box | 137 | 203 | - | - | |
Vifa1g08554 | 267 | Gene3D | - | 196 | 267 | - | - | |
Vifa1g08554 | 267 | SUPERFAMILY | RING/U-box | 208 | 266 | - | - | |
Vifa1g08554 | 267 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 141 | IPR013083 | - | |
Vifa1g08554 | 267 | ProSiteProfiles | TRIAD supradomain profile. | 58 | 267 | IPR044066 | - | |
Vifa1g08554 | 267 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 30 | 257 | IPR031127 | GO:0004842|GO:0016567 | |
Vifa1g08554 | 267 | SUPERFAMILY | RING/U-box | 59 | 143 | - | - | |
Vifa1g08554 | 267 | Pfam | IBR domain, a half RING-finger domain | 135 | 198 | IPR002867 | GO:0008270 | |
Vifa1g08554 | 267 | Pfam | IBR domain, a half RING-finger domain | 218 | 256 | IPR002867 | GO:0008270 | |
Vifa1g08554 | 267 | SMART | ibrneu5 | 199 | 263 | IPR002867 | GO:0008270 | |
Vifa1g08554 | 267 | SMART | ibrneu5 | 130 | 198 | IPR002867 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g08554 | Vifa-Chr1 | 1347949645 | 1347950523 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g08554 | 55 | 253 | C3H Transcription Factor Family | AT2G19610 | 30.288 | 2.79e-26 | 104 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g08554 | K11975 | - | psat:127136274 | 265.774 |