Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08554 ATGGGAAACAACGTTTGCATTCTTCATTGTGTTCCTATAAAAACCAAAAAAAGAAAGACCATAAAACAAAACCTCTCATCTCGATCACCACCTCAACCAACCCTAACCCTAGACAAATTTTTTGAAACCAATGAAATTACTATTCCCACTCCACTACCCATAGAAGGAGTCCCCTTTTATGATTGTGAAATATGCTATGAATCAAAGCCACTAAATGACTCATTCAACATAGAAGGTTGCACTCATTTCTTTTGCACAAAATGCACAATAAAATACATAGTTTCAAATCTACAACAAAACAAGGTTAAGCTAAATTGTCCCGGCCTAGGTTGTTCCGGAACATTGACTCCTCAATATTGCAAACCAATTTTACCTAACAATCTTATGGATTGGTGGGAGAAAGCTTTGAGTGAATCGGTGATTCCCGAAAGGAATAAATTCTATTGTCCTTTCTATGATTGTTCAGCACTTTTAATTAGCGAGGAAAATCGCGTAGGAGGAGTGATGCTAAATTCCATATATTCTACTTGTCCTCATTGCAATAGAAGGGTTTGTGTTAAGTGTAAAACTCCTTGGCATGAAGGTATGAGTTGTGAAAAGTTTCAAAGATTGAAGAATAGTAATGATGCTCTTATGGTTGATCTTGCCGGTAGAAGGAAATGGAAAAAATGTCCAAATTGTAAAAGTTTTGTTGAAAAAATTCAAGGATGCAATCACATTAATTGCAGGTGTTCTTATCAGTTTTGTTATCAATGTGGACGTGGCATTAGTCGTCTTAATCATGGTTGTAATCATAGAGATTGA 804 0.357 MGNNVCILHCVPIKTKKRKTIKQNLSSRSPPQPTLTLDKFFETNEITIPTPLPIEGVPFYDCEICYESKPLNDSFNIEGCTHFFCTKCTIKYIVSNLQQNKVKLNCPGLGCSGTLTPQYCKPILPNNLMDWWEKALSESVIPERNKFYCPFYDCSALLISEENRVGGVMLNSIYSTCPHCNRRVCVKCKTPWHEGMSCEKFQRLKNSNDALMVDLAGRRKWKKCPNCKSFVEKIQGCNHINCRCSYQFCYQCGRGISRLNHGCNHRD 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08554 267 CDD Rcat_RBR_unk 220 253 - -
Vifa1g08554 267 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
Vifa1g08554 267 FunFam RBR-type E3 ubiquitin transferase 58 143 - -
Vifa1g08554 267 SUPERFAMILY RING/U-box 137 203 - -
Vifa1g08554 267 Gene3D - 196 267 - -
Vifa1g08554 267 SUPERFAMILY RING/U-box 208 266 - -
Vifa1g08554 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 141 IPR013083 -
Vifa1g08554 267 ProSiteProfiles TRIAD supradomain profile. 58 267 IPR044066 -
Vifa1g08554 267 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 30 257 IPR031127 GO:0004842|GO:0016567
Vifa1g08554 267 SUPERFAMILY RING/U-box 59 143 - -
Vifa1g08554 267 Pfam IBR domain, a half RING-finger domain 135 198 IPR002867 GO:0008270
Vifa1g08554 267 Pfam IBR domain, a half RING-finger domain 218 256 IPR002867 GO:0008270
Vifa1g08554 267 SMART ibrneu5 199 263 IPR002867 GO:0008270
Vifa1g08554 267 SMART ibrneu5 130 198 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08554 Vifa-Chr1 1347949645 1347950523 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08554 55 253 C3H Transcription Factor Family AT2G19610 30.288 2.79e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08554 K11975 - psat:127136274 265.774