Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08547 ATGAGAAGAGGAGGCGGCGTTCCACCGTCCACCACGGTGGACGTCAAACCATTTCTCTTCTCCCCAGACATAAACATATCGGCTATCATCAACCTTTGCAAACAACAAAGCAACAATGCTAGGATCATCAGTTACATTCCCCAAAACGTTCCGTTCGTTTGCGAAATCTGCACCGACACTAAAACAATGAAAGACGCTTTCTGCATCGGAGCTTGTTCCCACAGGTACTGCTCCGACTGCATCGTTAAGTACATTGATTCAAATCTGAAAAACAACACCGTCAACATTCGTTGTCCCTTTATTGGTTGCCGCTGTTTGTGGGAAGCCGATAGTTGTCGTATGATTCTTCCTGTGGAGATTTTTGATCGGTGGGGGATTGCGTCTTGCGAGGCGTCGTTTGAGGTTTCATTGAAAGTATATTGTCCGTTTGCAGACTGTTCGGCTCTTATGATCAAAGACAGAAAGGAGAAGGTTATTGGAAGATCAAAGTGTCCAAATTGTAAGAGGATGTTCTGCGCAGAATGTAAGGTTGCATGGCATGAAGGAATGGAATGCAGCGAGTTCCAGAAATTGAATGCTGATGAGAAAGATAATGAAGGTGTTATGTTGATGTGCCTTGCGAAGGATATGAAGTGGAGGAGATGCCCTAATTGCAGATTTTATGTTGCCAGATCTCAGGGCTGCGACCAGATGATCTGCAGGTGTCAATGTAGATTCTGTTACAAATGTGGAGATGTTTCCAACCTTAAAGACCCGTGCAGTTGTTTTAAGCCCGCCCCGGTCCATAGGGTTCGATAA 798 0.4511 MRRGGGVPPSTTVDVKPFLFSPDINISAIINLCKQQSNNARIISYIPQNVPFVCEICTDTKTMKDAFCIGACSHRYCSDCIVKYIDSNLKNNTVNIRCPFIGCRCLWEADSCRMILPVEIFDRWGIASCEASFEVSLKVYCPFADCSALMIKDRKEKVIGRSKCPNCKRMFCAECKVAWHEGMECSEFQKLNADEKDNEGVMLMCLAKDMKWRRCPNCRFYVARSQGCDQMICRCQCRFCYKCGDVSNLKDPCSCFKPAPVHRVR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08547 265 ProSiteProfiles Zinc finger RING-type profile. 54 99 IPR001841 -
Vifa1g08547 265 Pfam Zinc finger, C3HC4 type (RING finger) 54 99 IPR018957 GO:0046872
Vifa1g08547 265 FunFam RBR-type E3 ubiquitin transferase 49 135 - -
Vifa1g08547 265 ProSiteProfiles TRIAD supradomain profile. 50 259 IPR044066 -
Vifa1g08547 265 SUPERFAMILY RING/U-box 52 131 - -
Vifa1g08547 265 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 253 IPR031127 GO:0004842|GO:0016567
Vifa1g08547 265 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
Vifa1g08547 265 SMART ibrneu5 122 185 IPR002867 GO:0008270
Vifa1g08547 265 Pfam IBR domain, a half RING-finger domain 138 185 IPR002867 GO:0008270
Vifa1g08547 265 Gene3D - 139 186 - -
Vifa1g08547 265 CDD Rcat_RBR_unk 211 245 - -
Vifa1g08547 265 CDD BRcat_RBR_unk 135 188 - -
Vifa1g08547 265 SUPERFAMILY RING/U-box 201 255 - -
Vifa1g08547 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 136 IPR013083 -
Vifa1g08547 265 Gene3D - 187 257 - -
Vifa1g08547 265 SUPERFAMILY RING/U-box 137 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08547 Vifa-Chr1 1347573464 1347579569 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08547 54 244 C3H Transcription Factor Family AT2G19610 30.693 1.89e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08547 K11975 - gmx:100803898 266.544