Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08543 ATGGCTTCGGAAGCAACACCTAGGACAAGAAAGAATCGAATTTCACCTTCCACACCAGAGGTCATCGACCTCGATTCTTTCCGTTCATACAGCAAGCGGAGGATCTCCGTCGTCATCGACCTTTCTGATGAAGAAGACTACGACATCAAGATACTCGATTTCATTCCCAAGCATACTCCGGTAAGAAAACGTAAGAGAAATTTCGAAAAAGGCGAGTCTTCAAATTCAAGTAACATTCCATTCGCTTGCGAAATCTGCACAGAAACTAAAACAATGAAGGAAGCTTTCTACATCAGCGGCGGATGCTCTCATGCCTATTGCTCTGAATGTGTGGCTAATTACATTAGCTCCAAGCTTGAAGATAACATTGTCAACATACAATGCCCAGTTCCGGAATGCAAAGCTACTTTGGAAGCGCAGTTTTGCCGTTCAATTCTTCCGGCCGAGGTTTTTGAAAAGTGGAGTAAAGCATTGTGCGAGGCTTTGTTTAATGTTTCACAGAAATTCTATTGTCCCTTTGCAGACTGTTCGGCTCTTTTGATTAATGACGAAACGGAGGCTGTTACAAATTCGGAATGCCCTAACTGTAATAGAATGTTCTGTGCACAATGTAAGGTTCCTTGGCATGATGGAATGGAATGCAGCGAGTTCCAGAAGCTGAACGCGGGCGAGAGGGAGAAAGAAGACATTATGTTGATGCGCCTTGCACAGAATATGCACTGGAGGTGA 729 0.4403 MASEATPRTRKNRISPSTPEVIDLDSFRSYSKRRISVVIDLSDEEDYDIKILDFIPKHTPVRKRKRNFEKGESSNSSNIPFACEICTETKTMKEAFYISGGCSHAYCSECVANYISSKLEDNIVNIQCPVPECKATLEAQFCRSILPAEVFEKWSKALCEALFNVSQKFYCPFADCSALLINDETEAVTNSECPNCNRMFCAQCKVPWHDGMECSEFQKLNAGEREKEDIMLMRLAQNMHWR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08543 242 ProSiteProfiles Zinc finger RING-type profile. 83 132 IPR001841 -
Vifa1g08543 242 FunFam RBR-type E3 ubiquitin transferase 78 165 - -
Vifa1g08543 242 SUPERFAMILY RING/U-box 156 219 - -
Vifa1g08543 242 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
Vifa1g08543 242 Pfam IBR domain, a half RING-finger domain 154 214 IPR002867 GO:0008270
Vifa1g08543 242 SMART ibrneu5 152 214 IPR002867 GO:0008270
Vifa1g08543 242 SUPERFAMILY RING/U-box 81 161 - -
Vifa1g08543 242 Gene3D - 169 219 - -
Vifa1g08543 242 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 242 IPR031127 GO:0004842|GO:0016567
Vifa1g08543 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 165 IPR013083 -
Vifa1g08543 242 Pfam Zinc finger, C3HC4 type (RING finger) 83 129 IPR018957 GO:0046872
Vifa1g08543 242 ProSiteProfiles TRIAD supradomain profile. 79 242 IPR044066 -
Vifa1g08543 242 CDD BRcat_RBR_unk 165 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08543 Vifa-Chr1 1347408299 1347409027 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08543 67 232 C3H Transcription Factor Family AT2G31770 27.168 5.21e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08543 K11975 - gmx:100803898 259.61