Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g08543 | ATGGCTTCGGAAGCAACACCTAGGACAAGAAAGAATCGAATTTCACCTTCCACACCAGAGGTCATCGACCTCGATTCTTTCCGTTCATACAGCAAGCGGAGGATCTCCGTCGTCATCGACCTTTCTGATGAAGAAGACTACGACATCAAGATACTCGATTTCATTCCCAAGCATACTCCGGTAAGAAAACGTAAGAGAAATTTCGAAAAAGGCGAGTCTTCAAATTCAAGTAACATTCCATTCGCTTGCGAAATCTGCACAGAAACTAAAACAATGAAGGAAGCTTTCTACATCAGCGGCGGATGCTCTCATGCCTATTGCTCTGAATGTGTGGCTAATTACATTAGCTCCAAGCTTGAAGATAACATTGTCAACATACAATGCCCAGTTCCGGAATGCAAAGCTACTTTGGAAGCGCAGTTTTGCCGTTCAATTCTTCCGGCCGAGGTTTTTGAAAAGTGGAGTAAAGCATTGTGCGAGGCTTTGTTTAATGTTTCACAGAAATTCTATTGTCCCTTTGCAGACTGTTCGGCTCTTTTGATTAATGACGAAACGGAGGCTGTTACAAATTCGGAATGCCCTAACTGTAATAGAATGTTCTGTGCACAATGTAAGGTTCCTTGGCATGATGGAATGGAATGCAGCGAGTTCCAGAAGCTGAACGCGGGCGAGAGGGAGAAAGAAGACATTATGTTGATGCGCCTTGCACAGAATATGCACTGGAGGTGA | 729 | 0.4403 | MASEATPRTRKNRISPSTPEVIDLDSFRSYSKRRISVVIDLSDEEDYDIKILDFIPKHTPVRKRKRNFEKGESSNSSNIPFACEICTETKTMKEAFYISGGCSHAYCSECVANYISSKLEDNIVNIQCPVPECKATLEAQFCRSILPAEVFEKWSKALCEALFNVSQKFYCPFADCSALLINDETEAVTNSECPNCNRMFCAQCKVPWHDGMECSEFQKLNAGEREKEDIMLMRLAQNMHWR | 242 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g08543 | 242 | ProSiteProfiles | Zinc finger RING-type profile. | 83 | 132 | IPR001841 | - | |
Vifa1g08543 | 242 | FunFam | RBR-type E3 ubiquitin transferase | 78 | 165 | - | - | |
Vifa1g08543 | 242 | SUPERFAMILY | RING/U-box | 156 | 219 | - | - | |
Vifa1g08543 | 242 | ProSitePatterns | Zinc finger RING-type signature. | 102 | 111 | IPR017907 | - | |
Vifa1g08543 | 242 | Pfam | IBR domain, a half RING-finger domain | 154 | 214 | IPR002867 | GO:0008270 | |
Vifa1g08543 | 242 | SMART | ibrneu5 | 152 | 214 | IPR002867 | GO:0008270 | |
Vifa1g08543 | 242 | SUPERFAMILY | RING/U-box | 81 | 161 | - | - | |
Vifa1g08543 | 242 | Gene3D | - | 169 | 219 | - | - | |
Vifa1g08543 | 242 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 59 | 242 | IPR031127 | GO:0004842|GO:0016567 | |
Vifa1g08543 | 242 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 165 | IPR013083 | - | |
Vifa1g08543 | 242 | Pfam | Zinc finger, C3HC4 type (RING finger) | 83 | 129 | IPR018957 | GO:0046872 | |
Vifa1g08543 | 242 | ProSiteProfiles | TRIAD supradomain profile. | 79 | 242 | IPR044066 | - | |
Vifa1g08543 | 242 | CDD | BRcat_RBR_unk | 165 | 217 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g08543 | Vifa-Chr1 | 1347408299 | 1347409027 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g08543 | 67 | 232 | C3H Transcription Factor Family | AT2G31770 | 27.168 | 5.21e-13 | 66.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g08543 | K11975 | - | gmx:100803898 | 259.61 |