Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08541 ATGGCTCCCGAAGTAACAACAAGGAGAAGAAGAAATAGAGTTCCACCTTCCACACCAGAGGTAATCAACCTTTCTGATGAAGAAGACGACGACATTAAGATCCTCGATATCATTCCTAAGCACACTCCTTTAAGAAAACGTAAGAGAAATTTCGAAAAAGGAGAGTCTTCAAATTCAAGTAACATTCCATTCGTTTGCGAAATCTGTACAGAAACTAAAACAACGAAGGAAGCTTTCTACATCAGAGGCTGCTCTCACGCATATTGCTCTGATTGCGTCGCAAATTACATCGGTTCCAAGCTTGAAGATAACATCGTCAACATCCCATGTCCAGTTCCGGAATGCAAAGCTTCTTTGGAAGCGCAGTTTTGCCGTTCAATTCTTCCGGCCGAGATTTTTGAAAAGTGGAGTAAAGCATTGTGCGAGGCTTTGTTTAATGTTTCACAGAAATTCTATTGTCCCTTTGCAGACTGTTCGGCTCTTTTGATTAATGACGAAACGGAGATGGTTAGAAATTCGGAATGCCCTAATTGTAATAGGATGTTCTGTGCACAATGTAAGGTTCCATGGCATGATGGAATCGAATGCAGCGAGTTCTGGAAGCTAAATGCGGGCGAGAGGGAGAAAGAAGATATTATGTTGATGCGCCTTGCACAGAATATGCACTGGAAGCGATGCCCTAAGTGCAAAATTTATGTTGCCAGAACAATGGGCTGCAATTCCATGACATGCAGGTGTGGATGTAGTTTTTGTTACAATTGTGGAGGTGCCTACACTGCTAGCGGCTGCGATTGTTGGAAACTCGGCAATGGGACTCCACAACATCCACAGGTTTTTTCTGGAAGAACTCTCACTAATAGGAATCTCATCTTTGAGGAGGAGGAAGTCTCTGAGGAGGAGGAGGAGGAAGAAGAGGAGGAAGAAGTCTATGAGGAGAAGGAGGAGAAAGATGAGGAGGAGGTCTATGAGGAGGAGGAGGTCTATGCGGAGGAGGAGGAGGATGAAGAAGTCTATGAGGAGGAGGAGGAGGTCTATGCGGAGGAAGAAGTCTATGAGGAGGAGGAGGAGGAGATAGAGGAGGAAGAGGTCTATGAGGAGGAGGAAGAGGAGCAGGAAGATGAGGAGGAGGGGGAAGAAATAGAAGAGGAAGAGGTCTATGAGGAGGAGGAGGAGGAGATAGAGGAGGAAGAGGTCTATGAGGAGGAGGAGGAACAGGAAGATGAGGAGGAGGAGGATATCTATGAGGAGGAGGGGGAAGAGATAGAGGAGGAGGAGGATGTCTATGAGGAGGAGGAGGAGGAAGATGTCTATGAGGAGGAGGACGACGACGACGACGATGACGACATGTACTGA 1353 0.4642 MAPEVTTRRRRNRVPPSTPEVINLSDEEDDDIKILDIIPKHTPLRKRKRNFEKGESSNSSNIPFVCEICTETKTTKEAFYIRGCSHAYCSDCVANYIGSKLEDNIVNIPCPVPECKASLEAQFCRSILPAEIFEKWSKALCEALFNVSQKFYCPFADCSALLINDETEMVRNSECPNCNRMFCAQCKVPWHDGIECSEFWKLNAGEREKEDIMLMRLAQNMHWKRCPKCKIYVARTMGCNSMTCRCGCSFCYNCGGAYTASGCDCWKLGNGTPQHPQVFSGRTLTNRNLIFEEEEVSEEEEEEEEEEEVYEEKEEKDEEEVYEEEEVYAEEEEDEEVYEEEEEVYAEEEVYEEEEEEIEEEEVYEEEEEEQEDEEEGEEIEEEEVYEEEEEEIEEEEVYEEEEEQEDEEEEDIYEEEGEEIEEEEDVYEEEEEEDVYEEEDDDDDDDDMY 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08541 450 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 294 IPR031127 GO:0004842|GO:0016567
Vifa1g08541 450 MobiDBLite consensus disorder prediction 1 15 - -
Vifa1g08541 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 148 IPR013083 -
Vifa1g08541 450 MobiDBLite consensus disorder prediction 292 450 - -
Vifa1g08541 450 Coils Coil 286 320 - -
Vifa1g08541 450 SMART ibrneu5 134 196 IPR002867 GO:0008270
Vifa1g08541 450 SMART ibrneu5 206 265 IPR002867 GO:0008270
Vifa1g08541 450 CDD BRcat_RBR_unk 147 199 - -
Vifa1g08541 450 CDD Rcat_RBR_unk 222 255 - -
Vifa1g08541 450 Coils Coil 328 434 - -
Vifa1g08541 450 MobiDBLite consensus disorder prediction 293 450 - -
Vifa1g08541 450 Gene3D - 151 197 - -
Vifa1g08541 450 ProSiteProfiles Zinc finger RING-type profile. 66 114 IPR001841 -
Vifa1g08541 450 Pfam IBR domain, a half RING-finger domain 136 196 IPR002867 GO:0008270
Vifa1g08541 450 SUPERFAMILY RING/U-box 207 265 - -
Vifa1g08541 450 Gene3D - 198 442 - -
Vifa1g08541 450 SUPERFAMILY RING/U-box 64 143 - -
Vifa1g08541 450 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g08541 450 SUPERFAMILY RING/U-box 138 201 - -
Vifa1g08541 450 ProSiteProfiles TRIAD supradomain profile. 62 269 IPR044066 -
Vifa1g08541 450 FunFam RBR-type E3 ubiquitin transferase 61 147 - -
Vifa1g08541 450 ProSitePatterns Zinc finger RING-type signature. 84 93 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08541 Vifa-Chr1 1347085951 1347087479 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08541 66 256 C3H Transcription Factor Family AT2G19610 31.034 3.28e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08541 K11975 - twl:120005643 301.597