Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08536 ATGAATATTAATCAACATTTACAAGTTGGTGATGATGATGACGACGATGATGTTCCACTCCCTGGATTTAGATTCCATCCTACTGATCAAGAACTTGTAACTTTTTATCTTCGGAGAAAACTCGACAAGAAACCTATTTCTGTTGAACTCATCAAACAAGTTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCTAGTGTACATGGAGCAGAAAATGAGAGTTATTTTTTCTGCAAAAGAGGGAGAAAATATAGGAACAGCGTTAGGCCAAATAGAGTAACTGGATCCGGATTCTGGAAAGCGACTGGAATAGATAAACCAATATACTCAAATGAAGGAGAAGGAAATGATTGTGTTGGACTCAAAAAAACACTTGTTTACTACCGTGGTAATGCTGGTAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGTCTTCCGTCTAATATTGCTACCAACACAAATCTTGATCATGATAAGAATGATAATGATGTTTCTCATGAAGCGGAAATTTGGACATTATGTAGAATTTTCAAAAGAAATGTACCACAAAGGAAACAACAAATACCAGAGGCGAAACCATTAGGTACCAAGCGTCAGAGTCAGATTATTCATGAAAAGAGTAGTAGAATGAACAATATTGAGTTCGGCGCAAATCAACAAACATATATCAATTTTGGTGCAAGCCACGAGCATCGGCCTATTAATGAACACAAGCTCATCAGTAACTATACGAGCATTGATCAAATGAATCAGTTTCATGTAGATCAGATGAGCTCTTCGGTGGCGCATCAACCTCAACAGAATAATGTAACGCAATCTTCAAATTATTGGGTTAATCAGGCTGCTAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAAGTTTTCTGTTGATTCGCCTAGTTTGTAA 936 0.3686 MNINQHLQVGDDDDDDDVPLPGFRFHPTDQELVTFYLRRKLDKKPISVELIKQVDIYKYDPWDLPKSSVHGAENESYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPIYSNEGEGNDCVGLKKTLVYYRGNAGKGTKTDWMMHEFRLPSNIATNTNLDHDKNDNDVSHEAEIWTLCRIFKRNVPQRKQQIPEAKPLGTKRQSQIIHEKSSRMNNIEFGANQQTYINFGASHEHRPINEHKLISNYTSIDQMNQFHVDQMSSSVAHQPQQNNVTQSSNYWVNQAANELLSFDNWDELGSVVKFSVDSPSL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08536 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 267 - -
Vifa1g08536 311 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g08536 311 ProSiteProfiles NAC domain profile. 19 183 IPR003441 GO:0003677|GO:0006355
Vifa1g08536 311 SUPERFAMILY NAC domain 20 183 IPR036093 GO:0003677|GO:0006355
Vifa1g08536 311 Gene3D NAC domain 28 186 IPR036093 GO:0003677|GO:0006355
Vifa1g08536 311 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
Vifa1g08536 311 FunFam NAC domain-containing protein 35 28 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08536 Vifa-Chr1 1346276844 1346278072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08536 16 195 NAC Transcription Factor Family AT5G39820 58.115 2.83e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g08536 NAM 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08536 - - gmx:100790471 423.32