Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08535 ATGGGTGTTAACGAGAGTTTCAAGATGAATAATCAACATTTACAAGATGATGATGATCTTCCACTTCCTGGATTTAGATTCCATCCTACTGATCAAGAACTTGTTACTTTTTATCTTCGAAGAAAACTCGACAAAAAACCTATTTCTGTCGATCTCATCAAACAAGTTGATATCTACAAATATGATCCTTGGGATCTTCCAAAATCGAGTGTACATGGAGCAGAAAAGGAAGGTTACTTCTTTTGCAAAAGAGGAAGAAAATATAGGAACAGTATTAGGCCAAATAGAGTAACTGGCTCTGGATTCTGGAAAGCAACTGGAATAGACAAATCAATATACTCAAATGGAGGAGAAGGTAATGACTGTGTTGGACTCAAAAAAACACTTGTTTACTACCGTGGTAATGCTGGTAAAGGCACCAAAACCGATTGGATGATGCACGAGTTTCGTCTTCCGTCTAATATTACCACCAACACAAATCTTGCTCATGCTAAAAATGATAATGATGTTTCTCATGAAGCAGAAATTTGGACATTGTGTAGAATTTTCAAAAGAAATGTATCACAAAGGAAACAACAAATGGCAGAGGTGAAACCATTAGCTACCAAGTGTGAGGCTGTTTATGACAAGAGCAATAGAATGAGTATGGAGTTCATGCTAAATCAACAAACATACATCAATTTTGGTCCAAGCCATGAAGATCACCATAACCAGGATAAATTAGTGTTACCAGTAAATAATTATACAAGTAGTGGTCAAAGGAATCAATTATCTTCAGTTGCACAGCAACCTCAACAAATTTTAATACCATCTTCAAACTTTTGGATTCAGCAAGCTGCAAATGAGCTATTATCATTTGATAATTGGGATGAGCTTGGGTCAGCTGTGAAGTTTGCTGTTGATTCACCTAGTTTGTAA 918 0.3617 MGVNESFKMNNQHLQDDDDLPLPGFRFHPTDQELVTFYLRRKLDKKPISVDLIKQVDIYKYDPWDLPKSSVHGAEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKSIYSNGGEGNDCVGLKKTLVYYRGNAGKGTKTDWMMHEFRLPSNITTNTNLAHAKNDNDVSHEAEIWTLCRIFKRNVSQRKQQMAEVKPLATKCEAVYDKSNRMSMEFMLNQQTYINFGPSHEDHHNQDKLVLPVNNYTSSGQRNQLSSVAQQPQQILIPSSNFWIQQAANELLSFDNWDELGSAVKFAVDSPSL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08535 305 Gene3D NAC domain 30 189 IPR036093 GO:0003677|GO:0006355
Vifa1g08535 305 ProSiteProfiles NAC domain profile. 21 185 IPR003441 GO:0003677|GO:0006355
Vifa1g08535 305 FunFam NAC domain-containing protein 35 30 188 - -
Vifa1g08535 305 Pfam No apical meristem (NAM) protein 23 151 IPR003441 GO:0003677|GO:0006355
Vifa1g08535 305 SUPERFAMILY NAC domain 21 185 IPR036093 GO:0003677|GO:0006355
Vifa1g08535 305 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08535 Vifa-Chr1 1346193470 1346194673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08535 18 199 NAC Transcription Factor Family AT5G39820 57.436 6.81e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g08535 NAM 1.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08535 - - gmx:100790471 420.239