Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08534 ATGGCTTCGAGAAGAAAGAATCGAATTTCACCTTCCACACCAGAGGTCATCGACCTCGATTCTTTCCGCTCATACGGCAAGCGAAGCATCTCTGTCGTCATCGACCTTTCTGATGAAGAAGACGACATTAAGATCCTCGATTTCATTCCTAAGCACACTCCTTTAAGAAAACGTAAGAGAAATTTCGAAAAAGGAGAGTCTTCAAATTCAAGTAACATTCCATTCGTTTGCGAAATCTGCACAGAAACTAAAACAATGAAGGAAGCATTCTACATCAGCGGCGGATGCTCTCATGCCTATTGCTCTGAATGCGTGGCTAATTACATCGGTTTCAAGCTTGAAGATAACATCGTAAACATCTCATGTCCAGTTCCCGAATGCAAAGCTACTTTAGAAGCGCAGTTTTGCCGTTCAATTCTTCCGGCCGAGGTTTTTGAAAAGTGGAGTAAAGCATTGTGCGAGGCTTTGTTTAATGTTTCACAGAAATTCTATTGTCCCTTTGCAGACTGTTCGGCTCTTCTGATTAATGATGAAACGGAGGCAGTTACAAATTCGGAATGCCCTAACTGTAATAGAATGTTCTGTGCACAATGTAAGGTTCCTTGGCATGATGGAATGGAATGCAGCGAGTTCCAGAAGCTGAACGCGGGCGAGAGGGAGAAAGAAGATATTATGTTGATGCGCCTTGCACAGGATATGCACTGGAGGCGATGCCCTAATTGCAAAATTTATGTTGCAAAAATATCGGGCTGCAATGACGTGATATGCAGGTGTCGATGTAGTTTTTGTTACAATTGTGGAGGTGCCTACACTGTTAGCGGCTGCAATTGTGGCTGCGGATCTGTGCGTAAAGCAGAAGGAATTAGTACATTACCATCGAGAACTTACAATATACATTGTGAATACCTTCTTAACTCAAACAAATGCGGTGAGCCTGGCGGCGTCGCCGCGGATCTGCACGCAAAGCGCAAGGATTGGAGTTCGTGTAAGATGGTTGCGGATCTTGAGCATGGCGGCGTCGTCGCGGATCTGCAGGCAAAGCGGAAGGATTGGAATCCATATAAGGTCGCTGCGGATCTGTGTATAAAGCAGAAGGAATTAGTACAGTACCATCGAGAACCTACGATATACATTGTGAATACCTTCTTAACTCAAACAATTGCAATGAGCATGGCGGCGTCGCCGCAGATCTGCACGCAAAGCGGAGGATTGGAGTACGTGTAA 1224 0.4502 MASRRKNRISPSTPEVIDLDSFRSYGKRSISVVIDLSDEEDDIKILDFIPKHTPLRKRKRNFEKGESSNSSNIPFVCEICTETKTMKEAFYISGGCSHAYCSECVANYIGFKLEDNIVNISCPVPECKATLEAQFCRSILPAEVFEKWSKALCEALFNVSQKFYCPFADCSALLINDETEAVTNSECPNCNRMFCAQCKVPWHDGMECSEFQKLNAGEREKEDIMLMRLAQDMHWRRCPNCKIYVAKISGCNDVICRCRCSFCYNCGGAYTVSGCNCGCGSVRKAEGISTLPSRTYNIHCEYLLNSNKCGEPGGVAADLHAKRKDWSSCKMVADLEHGGVVADLQAKRKDWNPYKVAADLCIKQKELVQYHREPTIYIVNTFLTQTIAMSMAASPQICTQSGGLEYV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08534 407 ProSiteProfiles TRIAD supradomain profile. 73 285 IPR044066 -
Vifa1g08534 407 CDD BRcat_RBR_unk 159 211 - -
Vifa1g08534 407 SUPERFAMILY RING/U-box 219 281 - -
Vifa1g08534 407 Gene3D - 210 291 - -
Vifa1g08534 407 Pfam IBR domain, a half RING-finger domain 148 208 IPR002867 GO:0008270
Vifa1g08534 407 FunFam RBR-type E3 ubiquitin transferase 72 159 - -
Vifa1g08534 407 CDD Rcat_RBR_unk 234 267 - -
Vifa1g08534 407 Gene3D - 163 209 - -
Vifa1g08534 407 SUPERFAMILY RING/U-box 75 159 - -
Vifa1g08534 407 ProSitePatterns Zinc finger RING-type signature. 96 105 IPR017907 -
Vifa1g08534 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 160 IPR013083 -
Vifa1g08534 407 ProSiteProfiles Zinc finger RING-type profile. 77 126 IPR001841 -
Vifa1g08534 407 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 302 IPR031127 GO:0004842|GO:0016567
Vifa1g08534 407 SMART ibrneu5 146 208 IPR002867 GO:0008270
Vifa1g08534 407 SMART ibrneu5 218 277 IPR002867 GO:0008270
Vifa1g08534 407 SUPERFAMILY RING/U-box 150 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08534 Vifa-Chr1 1346153142 1346156029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08534 77 268 C3H Transcription Factor Family AT2G19610 27.723 3.68e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08534 K11975 - csav:115705079 307.76