Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08533 ATGGCTTCAGAAGCAACACCTAGGAGAAGAAAGAATCGAATTTCACCTTCAACACCAGAGGTCATCGACCTCGATTCTTTCCGCTCATACTGCAAGCGAAGCATCTCCGTCGTCATCGACCTTTCTGATGAAGAAGACGACGACATTAAGATCCTCGATTTCATTCCTAAGCACACTCCTTTAAGAAAACGTAAGAGAAATTTCGAAAAAGGAGAGTCTTCAAATTCAAGTAACATTCCATTCGTTTGCGAAATCTGCACAGAAACTAAAACAATGAAGGAAGCATTCTACATCAGCGGCGGATGCTCTCATGCCTATTGCTCTGAATGCGTGGCTAATTACATCGTTCCAAGCTTGAAGATAACATTGCCAACATACAATGCCCAGTTCCGGAATGCAAAGCTACTTTGGAAGCGCAACTGTTCGGCTCTTCTGATTAATGATGAAACGGAGGCAGTTACAAATTCGGAATGCCCTAACTGTAATAGAATGTTCTGTGCACAATGTAAGGTTCCTTGGCATGATGGAATCGAATGCAGCGAGTTCCAGAAGCTGAACGCGGGCGAGAGGGAGAAAGAAGATATTATGTTGATGCGACTTGCACAGAATATGCACTGGAAGCGATGCCCTAAGTGCAAAATTTATGTTGCAAAAATATCGGGCTGCAATGACGTGATATGCAGGTGTCGATGTAGTTTTTGTTACAATTGTGGAGGTGCCTACACTGCTAGCGGCTGCAATTGTAAGAAATTCAGTAATGAGGAGGAAGAGGAGGAGGAGGTATAA 786 0.4351 MASEATPRRRKNRISPSTPEVIDLDSFRSYCKRSISVVIDLSDEEDDDIKILDFIPKHTPLRKRKRNFEKGESSNSSNIPFVCEICTETKTMKEAFYISGGCSHAYCSECVANYIVPSLKITLPTYNAQFRNAKLLWKRNCSALLINDETEAVTNSECPNCNRMFCAQCKVPWHDGIECSEFQKLNAGEREKEDIMLMRLAQNMHWKRCPKCKIYVAKISGCNDVICRCRCSFCYNCGGAYTASGCNCKKFSNEEEEEEEV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08533 261 Gene3D - 176 261 - -
Vifa1g08533 261 ProSiteProfiles TRIAD supradomain profile. 79 252 IPR044066 -
Vifa1g08533 261 SUPERFAMILY RING/U-box 81 115 - -
Vifa1g08533 261 ProSiteProfiles Zinc finger RING-type profile. 83 162 IPR001841 -
Vifa1g08533 261 SMART ibrneu5 189 248 IPR002867 GO:0008270
Vifa1g08533 261 SMART ibrneu5 124 179 IPR002867 GO:0008270
Vifa1g08533 261 CDD Rcat_RBR_unk 205 238 - -
Vifa1g08533 261 Pfam IBR domain, a half RING-finger domain 139 179 IPR002867 GO:0008270
Vifa1g08533 261 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 57 251 IPR031127 GO:0004842|GO:0016567
Vifa1g08533 261 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
Vifa1g08533 261 SUPERFAMILY RING/U-box 140 184 - -
Vifa1g08533 261 SUPERFAMILY RING/U-box 190 252 - -
Vifa1g08533 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 153 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08533 Vifa-Chr1 1346059608 1346060612 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08533 157 239 C3H Transcription Factor Family AT2G19610 34.524 3.95e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08533 K11975 - csav:115705109 210.69