Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g08531 | ATGATTTCCAAACGAGTCTTCAAGAGTAAGAAAAGTGACAGTGTAGTGTATAACCATTTCAATCACAAACCATCAATTCAACACCCTACTTCAATTCAAATCACCATGAAAACGACAACAACAACCGTCGTTCCCCCATCAACGGCAGAAGTAATCGACGTCGAATCATTTCATCTCCCTCCGACCACCGCCAAAACCTCCACCCCCGTCGTCATCGACCTTTCCGACGGCGAAGACGACGACGAACTCAGAATTCTCAATTTCGTTCCCAAATTTAATCCTTTACGAAAACGAAAAAGGATCAACGTGGAAAAAGGCGAGTCTTCGTCTGCTAATGCTAACACAAACGTCGTGCCGTTTATCTGCGAAATTTGCACGGAAACGAAAACCGCGAAGGATGCTTTCTTCATCAGCGGTTGTTCGCATGCTTACTGTTCTGGTTGCGTCGCTTTGTACGTGAGTTCGAAGCTGGAGGATAATGTGATCAACGTCAGGTGTCCTGTTTCTGGATGCAGTGGTTTGTTGGAAGCTGAGGATTGTCGTTCGATTCTTCCGGTGGAGGTTTTTGATCGGTGGGGGAAGGCGACGTGCGAGGCGTTGTTTGATGTATCGGAGAAATTCTATTGTCCGTATGCGGATTGTTCTGCTCTTTTGATCAATGATGGGACGGAGGCTGTTAGGAATTCGGAGTGTCCGAATTGTAGGAAGATATTTTGTGCACAATGTAAGGTTCCGTGGCATGATGGGATCGAATGCAGTGAGTTTCAGAAGCTGAATGCGGACGAGAGAGGGAAGGATGATGTTATGCTGATGAAGCTCGCCAAGGATATGAATTGGAGGAGATGCCCTAATTGTAGGTTTTATGTTGCCAAATCGGAAGGTTGCTTGTTCATGAAATGCAGGTGTGGAATTGCCTTCTGTTACAACTGTGGAGCTCATCACCAAAATCATAGCAGTCATTATTGCAACAACTGTAAACACTGA | 984 | 0.4553 | MISKRVFKSKKSDSVVYNHFNHKPSIQHPTSIQITMKTTTTTVVPPSTAEVIDVESFHLPPTTAKTSTPVVIDLSDGEDDDELRILNFVPKFNPLRKRKRINVEKGESSSANANTNVVPFICEICTETKTAKDAFFISGCSHAYCSGCVALYVSSKLEDNVINVRCPVSGCSGLLEAEDCRSILPVEVFDRWGKATCEALFDVSEKFYCPYADCSALLINDGTEAVRNSECPNCRKIFCAQCKVPWHDGIECSEFQKLNADERGKDDVMLMKLAKDMNWRRCPNCRFYVAKSEGCLFMKCRCGIAFCYNCGAHHQNHSSHYCNNCKH | 327 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g08531 | 327 | SMART | ring_2 | 122 | 169 | IPR001841 | - | |
Vifa1g08531 | 327 | CDD | Rcat_RBR_unk | 278 | 312 | - | - | |
Vifa1g08531 | 327 | Gene3D | - | 254 | 327 | - | - | |
Vifa1g08531 | 327 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 204 | IPR013083 | - | |
Vifa1g08531 | 327 | FunFam | RBR-type E3 ubiquitin transferase | 118 | 203 | - | - | |
Vifa1g08531 | 327 | SMART | ibrneu5 | 262 | 322 | IPR002867 | GO:0008270 | |
Vifa1g08531 | 327 | SMART | ibrneu5 | 190 | 252 | IPR002867 | GO:0008270 | |
Vifa1g08531 | 327 | SUPERFAMILY | RING/U-box | 120 | 199 | - | - | |
Vifa1g08531 | 327 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 65 | 326 | IPR031127 | GO:0004842|GO:0016567 | |
Vifa1g08531 | 327 | CDD | BRcat_RBR_unk | 203 | 255 | - | - | |
Vifa1g08531 | 327 | SUPERFAMILY | RING/U-box | 197 | 257 | - | - | |
Vifa1g08531 | 327 | ProSiteProfiles | TRIAD supradomain profile. | 118 | 327 | IPR044066 | - | |
Vifa1g08531 | 327 | Pfam | Zinc finger, C3HC4 type (RING finger) | 122 | 167 | IPR018957 | GO:0046872 | |
Vifa1g08531 | 327 | Pfam | IBR domain, a half RING-finger domain | 205 | 252 | IPR002867 | GO:0008270 | |
Vifa1g08531 | 327 | FunFam | RBR-type E3 ubiquitin transferase | 254 | 327 | - | - | |
Vifa1g08531 | 327 | Gene3D | - | 207 | 253 | - | - | |
Vifa1g08531 | 327 | SUPERFAMILY | RING/U-box | 263 | 326 | - | - | |
Vifa1g08531 | 327 | ProSiteProfiles | Zinc finger RING-type profile. | 122 | 168 | IPR001841 | - | |
Vifa1g08531 | 327 | ProSitePatterns | Zinc finger RING-type signature. | 140 | 149 | IPR017907 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g08531 | Vifa-Chr1 | 1345739486 | 1345742146 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g08531 | 122 | 312 | C3H Transcription Factor Family | AT2G19610 | 31.841 | 2.93e-22 | 94.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g08531 | K11975 | - | gmx:100807821 | 354.369 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g08531 | 1 | 1345739486 | 1345742146 | Vifa1g08531 | 1 | 1345739486 | 1345742146 | ECH |