Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08531 ATGATTTCCAAACGAGTCTTCAAGAGTAAGAAAAGTGACAGTGTAGTGTATAACCATTTCAATCACAAACCATCAATTCAACACCCTACTTCAATTCAAATCACCATGAAAACGACAACAACAACCGTCGTTCCCCCATCAACGGCAGAAGTAATCGACGTCGAATCATTTCATCTCCCTCCGACCACCGCCAAAACCTCCACCCCCGTCGTCATCGACCTTTCCGACGGCGAAGACGACGACGAACTCAGAATTCTCAATTTCGTTCCCAAATTTAATCCTTTACGAAAACGAAAAAGGATCAACGTGGAAAAAGGCGAGTCTTCGTCTGCTAATGCTAACACAAACGTCGTGCCGTTTATCTGCGAAATTTGCACGGAAACGAAAACCGCGAAGGATGCTTTCTTCATCAGCGGTTGTTCGCATGCTTACTGTTCTGGTTGCGTCGCTTTGTACGTGAGTTCGAAGCTGGAGGATAATGTGATCAACGTCAGGTGTCCTGTTTCTGGATGCAGTGGTTTGTTGGAAGCTGAGGATTGTCGTTCGATTCTTCCGGTGGAGGTTTTTGATCGGTGGGGGAAGGCGACGTGCGAGGCGTTGTTTGATGTATCGGAGAAATTCTATTGTCCGTATGCGGATTGTTCTGCTCTTTTGATCAATGATGGGACGGAGGCTGTTAGGAATTCGGAGTGTCCGAATTGTAGGAAGATATTTTGTGCACAATGTAAGGTTCCGTGGCATGATGGGATCGAATGCAGTGAGTTTCAGAAGCTGAATGCGGACGAGAGAGGGAAGGATGATGTTATGCTGATGAAGCTCGCCAAGGATATGAATTGGAGGAGATGCCCTAATTGTAGGTTTTATGTTGCCAAATCGGAAGGTTGCTTGTTCATGAAATGCAGGTGTGGAATTGCCTTCTGTTACAACTGTGGAGCTCATCACCAAAATCATAGCAGTCATTATTGCAACAACTGTAAACACTGA 984 0.4553 MISKRVFKSKKSDSVVYNHFNHKPSIQHPTSIQITMKTTTTTVVPPSTAEVIDVESFHLPPTTAKTSTPVVIDLSDGEDDDELRILNFVPKFNPLRKRKRINVEKGESSSANANTNVVPFICEICTETKTAKDAFFISGCSHAYCSGCVALYVSSKLEDNVINVRCPVSGCSGLLEAEDCRSILPVEVFDRWGKATCEALFDVSEKFYCPYADCSALLINDGTEAVRNSECPNCRKIFCAQCKVPWHDGIECSEFQKLNADERGKDDVMLMKLAKDMNWRRCPNCRFYVAKSEGCLFMKCRCGIAFCYNCGAHHQNHSSHYCNNCKH 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08531 327 SMART ring_2 122 169 IPR001841 -
Vifa1g08531 327 CDD Rcat_RBR_unk 278 312 - -
Vifa1g08531 327 Gene3D - 254 327 - -
Vifa1g08531 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 204 IPR013083 -
Vifa1g08531 327 FunFam RBR-type E3 ubiquitin transferase 118 203 - -
Vifa1g08531 327 SMART ibrneu5 262 322 IPR002867 GO:0008270
Vifa1g08531 327 SMART ibrneu5 190 252 IPR002867 GO:0008270
Vifa1g08531 327 SUPERFAMILY RING/U-box 120 199 - -
Vifa1g08531 327 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 65 326 IPR031127 GO:0004842|GO:0016567
Vifa1g08531 327 CDD BRcat_RBR_unk 203 255 - -
Vifa1g08531 327 SUPERFAMILY RING/U-box 197 257 - -
Vifa1g08531 327 ProSiteProfiles TRIAD supradomain profile. 118 327 IPR044066 -
Vifa1g08531 327 Pfam Zinc finger, C3HC4 type (RING finger) 122 167 IPR018957 GO:0046872
Vifa1g08531 327 Pfam IBR domain, a half RING-finger domain 205 252 IPR002867 GO:0008270
Vifa1g08531 327 FunFam RBR-type E3 ubiquitin transferase 254 327 - -
Vifa1g08531 327 Gene3D - 207 253 - -
Vifa1g08531 327 SUPERFAMILY RING/U-box 263 326 - -
Vifa1g08531 327 ProSiteProfiles Zinc finger RING-type profile. 122 168 IPR001841 -
Vifa1g08531 327 ProSitePatterns Zinc finger RING-type signature. 140 149 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08531 Vifa-Chr1 1345739486 1345742146 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08531 122 312 C3H Transcription Factor Family AT2G19610 31.841 2.93e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08531 K11975 - gmx:100807821 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08531 1 1345739486 1345742146 Vifa1g08531 1 1345739486 1345742146 ECH