Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08527 ATGATGTTACATTTTCAGGGTGTGTCAAGACATTGTAGTCTTCTTGCTGTTCTTGGTAGTAAATTACATGACAGTAAACAGAAGCAGAAGCAGGATACTGTTTCTGAGGATCAATTTTCGTCGTACCCCTATCCGGAGCTTTCTTCGTCCGGGCGTCTCGAGGTTAAAGTATTGAGAAAACCTAGTTTCGATGAACTTACTCGAGTTTTTGAGCAACTGCAACCGGATTTTGTTTACCTGCAAGGTCAGCAGCTAGATGATAAAGGAGAAATTGGGTCACTTGTGTGGGAAGATTTTGACCTTTCTTCCCCGGAAGCCTTGTGTGGATTATTTTCTTCGAAGTTACCTAATACTGTTTATTTGGAAACGCCGAATGGTGAAAAGTTGGCAGAGGCGCTACATTCCAAGGGAGTTCCTTACACTATATACTGGAAAAATGAATTTTCAAACTATGCAGCTTCACATTTTCATCAAGCTTTTTTCTCAGTGGCGCAGAGTACATCTAGCCATGCATGGGATGCTTTCCAACTTGCTCAGGCATCTTTTAGACTATACTGCGAGCAAAACAATGTCGTGCCCCACAACAGTCGGAAGGGCGGTGGTAAGCTTGGGCCACAAATTCTTGGGGAACCTCCTATCATTGAAGTTAGTCCATGTGAAGTAAACACAAAGGAAGAAGAAGAGGAAGAAGAAGAAGATTCACCAGGGTTTAGTTCTTCTATTAAGATATATGATGATGATGTGAATACAAGATTTCTTGTTTGTGGATTTCCCTGCACATTGGATGCATGTTTATTGGGGTCGTTAGAGGATGGACTCAATGCTCTCCTATGTACCGAAATACGTGGATGTAAACTTCAAAGTCGGACGAGTGCACCACCACCACCTCTCCAAGCAGGAACATTCTCACGAGGCGTGGTAACCATGCGTTGCGAAATATCCACATGCAGTTCTACTCACATATCACTTCTAGTATCCGGTAGTGCAGACGCTTGTTTCAATGATCAGCTTTTGGAGAATCATATTAAGAAAGAACTCACCGAGAATAGTCAACTTGTCCAGGCAATTCCTGGTCACGAGCAAAAGAAATTACCTTCATATGAACCTCGAAGATCAGCCTCAGTTGCTTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTACATGGGCTTCACAGGTTCTGAGACAACTTGCATCTAATATGTCATACCGCTGCCTAGTGATGTTGGGAGTTGCTAGTATTCAAGGATTGCCCGTTGCATCCTTTACTAAAGATGATTCAGAGTGTCTTCTTTTCCTTTGTAATCGGCATGAGAAAAACAACCACTCCAAAGACATCGTTTTCTCGGGTCATCCTAGTTGGTTGGTGCCTCCTGCACCTAGTCGAAAAAGATCTGAACCAGGCTCTCGTTTTAAAACCATTAATGCTAGCGGCATGGAAGTTGAAGATATTTGCAGCGTTAGACAAAAATTAAGTTTTGCTGCAATGAGGCCAATCCCACAGTCTCATCGCCAGAAGGTTCTCCCTTTTTCTGGATTTTCTGAGGGAGAAAGATATGATGGCGACCATGGAAAACCAAATCAGCTTCTTGTTCCAATTAAGCATAATGGTTTAGGTCCTCATTCAGCCACAAACAGAAAATCCGTGTCAAACTCGTTTCAAGCTCACCAGATAATTTCTTTGAATCCAATACCGATGAAAAAACATGGTTGCAACAGAGCTCCAATACGAGCTTGCTCAGAGGAGGAATTCCTAAAAGATGTAATGCAATTTTTAGTCCTTAGAGGGCATACCCGCCTCATTCCACAAGGCGGCTTTGCTGAGTTTCCTGACGCCGTTCTGAATGCTAAACGCCTTGACCTTTTCAACTTGTATAGAGAGGTTGTTTCAAGAGGAGGCTTCCACGTTGGGAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTGACACACAGAATGACAGGTGTTGGCAATACACTCAAGAGACATTACGAAACATATCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAATGCTGCTTATTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAATTGCGGTATATGTGGTGAATGGGCTCATTTTGGCTGTGATAGGCGGCAGGGTCTCGGAGCATTTAAGGACTACGCCAAAACTGACGGGCTTGATTACGTTTGTCCGCACTGCAGCATATCAAATTTCAGCAAAAAATCGCAGAAAACTACAAATGGTTATTAA 2274 0.4274 MMLHFQGVSRHCSLLAVLGSKLHDSKQKQKQDTVSEDQFSSYPYPELSSSGRLEVKVLRKPSFDELTRVFEQLQPDFVYLQGQQLDDKGEIGSLVWEDFDLSSPEALCGLFSSKLPNTVYLETPNGEKLAEALHSKGVPYTIYWKNEFSNYAASHFHQAFFSVAQSTSSHAWDAFQLAQASFRLYCEQNNVVPHNSRKGGGKLGPQILGEPPIIEVSPCEVNTKEEEEEEEEDSPGFSSSIKIYDDDVNTRFLVCGFPCTLDACLLGSLEDGLNALLCTEIRGCKLQSRTSAPPPPLQAGTFSRGVVTMRCEISTCSSTHISLLVSGSADACFNDQLLENHIKKELTENSQLVQAIPGHEQKKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLASNMSYRCLVMLGVASIQGLPVASFTKDDSECLLFLCNRHEKNNHSKDIVFSGHPSWLVPPAPSRKRSEPGSRFKTINASGMEVEDICSVRQKLSFAAMRPIPQSHRQKVLPFSGFSEGERYDGDHGKPNQLLVPIKHNGLGPHSATNRKSVSNSFQAHQIISLNPIPMKKHGCNRAPIRACSEEEFLKDVMQFLVLRGHTRLIPQGGFAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLDYVCPHCSISNFSKKSQKTTNGY 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08527 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 747 IPR013083 -
Vifa1g08527 757 Pfam ARID/BRIGHT DNA binding domain 583 680 IPR001606 GO:0003677
Vifa1g08527 757 MobiDBLite consensus disorder prediction 220 240 - -
Vifa1g08527 757 Gene3D - 575 683 IPR036431 GO:0003677
Vifa1g08527 757 ProSiteProfiles ARID domain profile. 580 684 IPR001606 GO:0003677
Vifa1g08527 757 SMART ARID_2 577 680 - -
Vifa1g08527 757 MobiDBLite consensus disorder prediction 26 47 - -
Vifa1g08527 757 SUPERFAMILY ARID-like 581 695 IPR036431 GO:0003677
Vifa1g08527 757 SMART bright_3 581 685 IPR001606 GO:0003677
Vifa1g08527 757 SUPERFAMILY FYVE/PHD zinc finger 683 746 IPR011011 -
Vifa1g08527 757 CDD PHD_ARID4_like 690 741 - -
Vifa1g08527 757 CDD ARID 582 680 - -
Vifa1g08527 757 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 757 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08527 Vifa-Chr1 1345161081 1345166941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08527 2 756 ARID Transcription Factor Family AT3G43240 62.714 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa1g08527 ARID 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08527 - - tpra:123911371 1369.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08527 1 1345161081 1345166941 Vifa1g08527 1 1345161081 1345166941 ECH