Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08526 ATGGATACTCCACCAAACCACACTTCTTCACATAATAACTTTCTCATTTCCGTAACCGTTTTCGCAGTTACCGTTATCGTTTTCTTAACGATCTATTTCATCTTCCGTTACCGCCGCAATAGCATCACCCGTCGTTTAACTCCGCCGTCGTCTTCCACAGTTTTATCATCCGGCAATAGAGTATCGCCGGAGATGGCTTCGTCATCGTCTTCCGTAGTTGATTCTCTCCCGCTGTTTACTTTCTCTTCCATCAAACGCCGTTCATCGTCTGTTATCTCCGGCGACTGCGCTGTTTGTTTGTCGAGGTTTGAGCAGAATGACGTCCTCCGTCTTCTCCCTCTCTGCTGCCACGCATTCCACGCGGAATGCGTTGATGTTTGGCTCCGGTCGAATCTGACGTGTCCGCTTTGTCGATCAGCTGTTATCGCTTCGGAATCGGAGCTTGTGAAGATTTCCCAGCCGGTATCGTCTTCTTCTGATAACAGTTTCCGTTTGGAGTTAGGAAATGTCAGCAACCGTGGAGCCACCGCATCTGAGATTGTCACCGGAGAAAACGATCGGAGATCATACTCCGTCGGCGCATTCGAGTATTTCGTCGACGAGGAGGCTGAGATTCCGTTCGGTCACACTAATCGAAGAGCTCTTTCTGGTGAGAAAGATGATGCACCGGCAGTGCCGGCGGGGGAGGTCCCGGTTCCGGTGGCTTCTTTGGTCGGTGAAGGTAACAACTGGCTGAAGGATTACATGGACAATATCTCTAGTGTGACGTGGTTTAGAAATTCTGGAAGGTTCTTCAATGGGAGTAGTAGAAGAAACGACGTAGTTGGAGTTCAAGATTTTGATGTTGAAGCTAATACCTTTGGGGAAGAAATTAGTGAAATGTTTAGATGGGTCTCTGGCTTTTGA 906 0.4845 MDTPPNHTSSHNNFLISVTVFAVTVIVFLTIYFIFRYRRNSITRRLTPPSSSTVLSSGNRVSPEMASSSSSVVDSLPLFTFSSIKRRSSSVISGDCAVCLSRFEQNDVLRLLPLCCHAFHAECVDVWLRSNLTCPLCRSAVIASESELVKISQPVSSSSDNSFRLELGNVSNRGATASEIVTGENDRRSYSVGAFEYFVDEEAEIPFGHTNRRALSGEKDDAPAVPAGEVPVPVASLVGEGNNWLKDYMDNISSVTWFRNSGRFFNGSSRRNDVVGVQDFDVEANTFGEEISEMFRWVSGF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08526 301 Pfam Ring finger domain 95 138 IPR001841 -
Vifa1g08526 301 SMART ring_2 96 137 IPR001841 -
Vifa1g08526 301 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Vifa1g08526 301 FunFam E3 ubiquitin-protein ligase ATL6 58 144 - -
Vifa1g08526 301 CDD RING-H2_EL5-like 95 138 - -
Vifa1g08526 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 143 IPR013083 -
Vifa1g08526 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 13 205 - -
Vifa1g08526 301 SUPERFAMILY RING/U-box 72 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08526 Vifa-Chr1 1345031872 1345032777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08526 14 138 C3H Transcription Factor Family AT2G34990 33.600 5.16e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08526 K10663 - gmx:100804962 302.367