Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08523 ATGGCGTTCCAAGATTTCGACCTTATATCTGAAAGGCGGAAAACCAATGCCAAATCACACCTTAGAAAAAAAATTATGGTCGGCGTTACTTCCGCCCTTCTCATAGCGTGTGTTATAGCAGCTGCAGCTTTTGTTATCGTGAGACGATCAGGACCGGACAGTAATGCGAAACTTCCGACAGCAGCTTCAGAAATCGCGCGTGTTGAAAAATACTCTAGGCTTGTGAAAATGTTATGTAGCAATTCCAATTACAAGGAAAAATGTGAAAGCACACTTACTGAGGCATTGAAAAAAGATCCTAAGTTGTCAGAACCAAAGGATCTTCTAATGGTTTCTATGGTTGTTGCTGAGAATGAAATTAACAAGGCGTTCAATGAATCTTCGAACTTGAAATTCGCTAACGAGGAAGAAAAGGGAGCTTATGATGATTGTAAGGTAATGTTTGCTGATTCTAGAGAAGAATTGGGATTCTCAATCAATGAAGTTGGTCAAGTTGATGTTTCCAAATTAGCTGAAAAAGAAGCTCAGTTGAACAACTGGCTTAGTGCTGTTTTATCTTACCAACAAAGTTGCCTTGAAGGTTTCCCCGAAGGAGATTTTAAGGAAAAATTGGAGAAGATGTTTACTGAATCAAGGCAACTTGTGAGCAATTCACTTGCTATTGTTTCACAAGTTTCTAAAATTCTTAATGTATTCCATGGTGGACTTTCTGGATTAAAACTTCCTTGGGGTAAATCTGCTGCACCAGCTCCCGCTGCCGCTGCTGCTGCTCGTGGTGCTGCCGCTGCTGCTGCTCGTGGTGCTGCTGCTCCTGCTGGTTCGCCTGGTGCTGCACCTTTTGGTGCTCCCAGTGATTCTCCAATTTTCGAAGCCCCTGCTGGTGCTCCTGGCACTGCTCCCGCTGATGATGTTGCTGCTCCCCCAGCTTGGGCTGCACCAGTTCTTGAGTTGGTTGGATCAACTGAGAAACCTACTCCTAATGTCACCGTTGCGCAAGATGGTAGTGGAAACTTCAAAACCATCTCTGAAGCTTTGGCCGCTATACCATTAACTTATGAAGGAAGGTATGTTGTTTACGTTAAGCAAGGAGTGTATGATGAGTTGGTTACAGTAACAAAGAAAATGGTGAACCTCACCATGTATGGTGATGGTGGTTTAAAAAGTATTGTAACCGGAAACAAAAATTTCGTCGATGGAGTTAGAACTTTCCAAACGGCATCATTCGTTGTACTTGGACAAGGATTTGTTGGAAGAGACATGGGATTCAGAAATACAGCCGGTGCGATAAAGCATCAAGCCGTGGCCGCCAGAGTCCAAGCAGATCAAGCTGTATTCATCAACTGCAACTTCGAGGGTTACCAAGACACTCTATACGCACAAACACACAAACAATTCTACCGCGACTGTGTCATTTCAGGCACAATCGATTTCATCTTCGGTGACGCCTCAGCAGTCTTCCAAAACTGCGAATTGGTCCTTAGAAAGCCACTGGATAACCAACAAAATATTGTGACAGCACAAGGAAGAATCGACAAACAAGAAAATACCGGATTCGTTCTACAAAAATGTGTGATCAAGGGAGAAGCTGACCTTCCTCCAACAACCAAGAACTACATTGGAAGACCATGGAAGGAATACTCTAGGACAATTATCATGGAATCTGACATAGGTGCAATGATTCATCCTGATGGTTGGTTACCTTGGGAAGGTGATTTTGCACTAAGAACATTGTATTATGGTGAGTTTAACAACGTTGGTGCTGGTGCTAACACTAATGCTAGAGTTAAGTGGATTGGACGCAAAGATATTAATAGGGAAGAGGCTATTACTTATACCGTGGAACCTTTCTTGCAAGGAACATGGATCAATGGTACTGGTGTCCCAGCTATTTTGGGATTGTACAATTGA 1908 0.4303 MAFQDFDLISERRKTNAKSHLRKKIMVGVTSALLIACVIAAAAFVIVRRSGPDSNAKLPTAASEIARVEKYSRLVKMLCSNSNYKEKCESTLTEALKKDPKLSEPKDLLMVSMVVAENEINKAFNESSNLKFANEEEKGAYDDCKVMFADSREELGFSINEVGQVDVSKLAEKEAQLNNWLSAVLSYQQSCLEGFPEGDFKEKLEKMFTESRQLVSNSLAIVSQVSKILNVFHGGLSGLKLPWGKSAAPAPAAAAAARGAAAAAARGAAAPAGSPGAAPFGAPSDSPIFEAPAGAPGTAPADDVAAPPAWAAPVLELVGSTEKPTPNVTVAQDGSGNFKTISEALAAIPLTYEGRYVVYVKQGVYDELVTVTKKMVNLTMYGDGGLKSIVTGNKNFVDGVRTFQTASFVVLGQGFVGRDMGFRNTAGAIKHQAVAARVQADQAVFINCNFEGYQDTLYAQTHKQFYRDCVISGTIDFIFGDASAVFQNCELVLRKPLDNQQNIVTAQGRIDKQENTGFVLQKCVIKGEADLPPTTKNYIGRPWKEYSRTIIMESDIGAMIHPDGWLPWEGDFALRTLYYGEFNNVGAGANTNARVKWIGRKDINREEAITYTVEPFLQGTWINGTGVPAILGLYN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08523 635 CDD PMEI-like_3 78 227 - -
Vifa1g08523 635 PANTHER PECTINESTERASE 38 623 - -
Vifa1g08523 635 Pfam Pectinesterase 327 619 IPR000070 GO:0030599|GO:0042545
Vifa1g08523 635 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 225 IPR035513 -
Vifa1g08523 635 NCBIfam pectinesterase inhibitor domain 63 225 IPR006501 GO:0004857
Vifa1g08523 635 FunFam Pectinesterase 71 226 - -
Vifa1g08523 635 SUPERFAMILY Pectin lyase-like 324 629 IPR011050 -
Vifa1g08523 635 ProSitePatterns Pectinesterase signature 2. 471 480 IPR033131 -
Vifa1g08523 635 Pfam Plant invertase/pectin methylesterase inhibitor 74 221 IPR006501 GO:0004857
Vifa1g08523 635 Gene3D - 321 633 IPR012334 -
Vifa1g08523 635 FunFam Pectinesterase 321 633 - -
Vifa1g08523 635 SMART PMEI_2 70 221 IPR006501 GO:0004857
Vifa1g08523 635 MobiDBLite consensus disorder prediction 274 302 - -
Vifa1g08523 635 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 226 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08523 Vifa-Chr1 1344400542 1344402764 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08523 326 635 Carbohydrate Esterase AT2G26450 62.420 3.54e-141 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08523 - - gmx:100796485 788.875